Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.96598 * 300.70620 * 9 7 2 11 11 C 1.54140 * 111.10374 * 176.57050 * 9 7 2 12 12 C 1.50890 * 110.49033 * 270.38416 * 11 9 7 13 13 C 1.39620 * 126.76437 * 159.38117 * 12 11 9 14 14 C 1.38105 * 121.01602 * 179.66169 * 13 12 11 15 15 O 1.36001 * 119.78936 * 179.97438 * 14 13 12 16 16 C 1.38734 * 120.41941 * 359.97381 * 14 13 12 17 17 C 1.38023 * 119.23503 * 0.16037 * 16 14 13 18 18 C 1.38792 * 120.24592 * 0.02562 * 17 16 14 19 19 S 1.77584 * 130.48995 * 179.33418 * 18 17 16 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.27852 * 30.66015 * 11 9 7 22 22 H 1.08996 * 109.28008 * 150.18263 * 11 9 7 23 23 H 1.07997 * 119.49257 * 359.64343 * 13 12 11 24 24 H 0.96705 * 114.00171 * 89.99999 * 15 14 13 25 25 H 1.07992 * 120.38199 * 180.13905 * 16 14 13 26 26 H 1.08003 * 119.87539 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6061 -2.5772 0.8749 11 6 2.2165 -3.6975 -0.0872 12 6 2.4809 -4.0596 -1.5279 13 6 3.5654 -4.7878 -2.0211 14 6 3.6866 -5.0582 -3.3699 15 8 4.7536 -5.7694 -3.8232 16 6 2.7269 -4.6091 -4.2655 17 6 1.6505 -3.8855 -3.7933 18 6 1.5327 -3.6116 -2.4378 19 16 0.2906 -2.7066 -1.5480 20 1 -0.4850 0.8401 0.0004 21 1 3.1576 -3.4371 0.3971 22 1 1.7744 -4.5535 0.4226 23 1 4.3211 -5.1448 -1.3372 24 1 4.6087 -6.7253 -3.8447 25 1 2.8212 -4.8228 -5.3198 26 1 0.8976 -3.5304 -4.4814 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436103.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = -46.326381 kcal Electronic energy + Delta-G solvation = -12537.670702 eV Core-core repulsion = 10285.228182 eV Total energy + Delta-G solvation = -2252.442519 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.60392 -37.96527 -35.86557 -34.01360 -31.17131 -30.08964 -27.20121 -24.14819 -23.52750 -21.90775 -18.94941 -18.81907 -18.20742 -16.79148 -16.49489 -16.05883 -15.52528 -15.34686 -14.46859 -14.30455 -13.91360 -13.53431 -13.22794 -12.91455 -12.67968 -12.51504 -12.39386 -11.99597 -11.68054 -11.36288 -10.80170 -10.52096 -10.11466 -9.70953 -8.42163 -7.84598 -6.39602 0.25624 0.36755 1.19776 1.40699 1.44382 1.52107 2.06612 2.34720 2.64397 3.20860 3.28387 3.84465 4.01222 4.23643 4.33290 4.52632 4.62346 4.74491 4.95623 5.05930 5.18116 5.28524 5.45374 5.51413 5.58689 5.86229 5.91958 6.58440 6.94239 7.23477 8.76072 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.037749 B = 0.008928 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.568648 B = 3135.334444 C = 3311.858991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.028 3.972 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.105 3.895 10 H 0.057 0.943 11 C -0.075 4.075 12 C -0.096 4.096 13 C -0.129 4.129 14 C 0.092 3.908 15 O -0.502 6.502 16 C -0.126 4.126 17 C -0.098 4.098 18 C -0.088 4.088 19 S -0.266 6.266 20 H 0.269 0.731 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.140 0.860 24 H 0.408 0.592 25 H 0.160 0.840 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -9.488 -4.820 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.085 0.915 9 C -0.019 4.019 10 H 0.075 0.925 11 C -0.113 4.113 12 C -0.102 4.102 13 C -0.150 4.150 14 C 0.044 3.956 15 O -0.314 6.314 16 C -0.146 4.146 17 C -0.123 4.123 18 C -0.202 4.202 19 S -0.018 6.018 20 H 0.078 0.922 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.158 0.842 24 H 0.267 0.733 25 H 0.178 0.822 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.776 -8.416 -5.079 10.929 hybrid contribution 0.880 0.215 0.443 1.009 sum 5.656 -8.202 -4.635 10.988 Atomic orbital electron populations 1.70022 1.07617 1.28335 1.46014 1.25826 0.95593 1.02976 0.93440 0.85453 0.78546 0.78390 0.78752 1.19008 1.19435 1.20769 1.21405 0.93282 0.90455 1.50696 0.91532 1.21583 0.94130 0.95772 0.90364 0.92472 1.21001 1.00661 0.97299 0.92348 1.20980 0.95429 0.98664 0.95165 1.21177 0.97254 1.00805 0.95718 1.18061 0.88468 0.98451 0.90608 1.84811 1.35577 1.24269 1.86791 1.21475 0.92651 0.99500 1.01022 1.20491 0.99376 1.00251 0.92165 1.22550 0.99223 1.01150 0.97236 1.86475 1.25884 1.66542 1.22876 0.92172 0.89433 0.89352 0.84179 0.73331 0.82222 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.32 12.60 21.45 0.27 -50.05 15 2 C 0.03 1.50 5.35 84.66 0.45 1.96 15 3 Si 0.96 42.64 29.54 68.60 2.03 44.66 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 7 C -0.52 -27.75 8.58 25.60 0.22 -27.53 15 8 H 0.07 3.50 7.65 -2.91 -0.02 3.48 15 9 C 0.11 5.29 3.26 30.23 0.10 5.39 15 10 H 0.06 3.04 8.14 -2.39 -0.02 3.02 15 11 C -0.07 -3.05 5.81 30.29 0.18 -2.87 15 12 C -0.10 -3.84 5.98 -19.33 -0.12 -3.95 15 13 C -0.13 -4.25 9.90 22.57 0.22 -4.02 15 14 C 0.09 2.69 6.67 22.36 0.15 2.84 15 15 O -0.50 -11.66 13.49 -93.57 -1.26 -12.92 15 16 C -0.13 -3.71 10.02 22.34 0.22 -3.48 15 17 C -0.10 -3.52 10.05 22.35 0.22 -3.30 15 18 C -0.09 -3.79 6.48 22.55 0.15 -3.64 15 19 S -0.27 -13.44 21.71 -56.49 -1.23 -14.67 15 20 H 0.27 14.51 8.31 -92.70 -0.77 13.74 15 21 H 0.09 3.36 7.80 -2.39 -0.02 3.35 15 22 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 23 H 0.14 3.92 8.06 -2.91 -0.02 3.90 15 24 H 0.41 4.92 9.07 -74.05 -0.67 4.25 15 25 H 0.16 3.55 8.06 -2.91 -0.02 3.53 15 26 H 0.13 4.34 8.06 -2.91 -0.02 4.32 15 Total: -1.00 -64.14 244.03 2.14 -62.01 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.53 Total: 9.58 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 1.80 Total: -38.62 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.27 Total: -50.05 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.26 Total: -12.92 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -13.44 SS G_CDS: -1.23 Total: -14.67 kcal Total: -64.14 2.14 -62.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436103.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.683 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds