Wall clock time and date at job start Mon Mar 30 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48501 * 109.47352 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47282 * 300.00094 * 3 2 1 6 6 H 1.48504 * 109.47187 * 59.99827 * 3 2 1 7 7 C 1.38610 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00108 * 179.97438 * 7 2 1 9 9 O 1.34802 * 120.00587 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00656 * 185.05576 * 9 7 2 11 11 C 1.38684 * 119.98299 * 354.39238 * 10 9 7 12 12 C 1.38188 * 119.21288 * 179.69718 * 11 10 9 13 13 C 1.37771 * 120.61085 * 359.83114 * 12 11 10 14 14 C 1.39673 * 121.20115 * 0.04069 * 13 12 11 15 15 C 1.38755 * 117.83481 * 0.27899 * 14 13 12 16 16 S 1.77432 * 108.31611 * 179.32141 * 15 14 13 17 17 C 1.83304 * 96.60133 * 344.87478 * 16 15 14 18 18 C 1.50896 * 126.79476 * 180.47007 * 14 13 12 19 19 H 0.97006 * 119.99873 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.39430 * 359.71620 * 11 10 9 21 21 H 1.07998 * 119.68853 * 179.84704 * 12 11 10 22 22 H 1.08001 * 119.40274 * 180.02562 * 13 12 11 23 23 H 1.08998 * 111.10199 * 266.87422 * 17 16 15 24 24 H 1.09001 * 111.14157 * 142.78017 * 17 16 15 25 25 H 1.08995 * 109.27889 * 320.81645 * 18 14 13 26 26 H 1.08996 * 109.28554 * 80.26619 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3464 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3679 -0.0016 10 6 2.0702 -3.5044 0.1045 11 6 3.4554 -3.4375 0.0905 12 6 4.1881 -4.6035 0.2059 13 6 3.5548 -5.8199 0.3371 14 6 2.1612 -5.9118 0.3566 15 6 1.4327 -4.7373 0.2334 16 16 -0.2936 -5.1456 0.2696 17 6 -0.0910 -6.9438 -0.0225 18 6 1.3404 -7.1694 0.5034 19 1 -0.4850 0.8401 -0.0004 20 1 3.9555 -2.4855 -0.0092 21 1 5.2672 -4.5605 0.1933 22 1 4.1467 -6.7189 0.4263 23 1 -0.1606 -7.1792 -1.0845 24 1 -0.8158 -7.5197 0.5530 25 1 1.8095 -7.9736 -0.0634 26 1 1.2971 -7.4502 1.5557 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439914.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:13 Heat of formation + Delta-G solvation = -2.660294 kcal Electronic energy + Delta-G solvation = -12543.595159 eV Core-core repulsion = 10293.046143 eV Total energy + Delta-G solvation = -2250.549016 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.11886 -36.93862 -33.69849 -32.29725 -29.32924 -28.53493 -25.38024 -23.72690 -21.75544 -20.72185 -17.66632 -17.55557 -15.67104 -15.24277 -14.85639 -14.46601 -14.06590 -13.68010 -13.56570 -13.03702 -12.22098 -12.04349 -11.81724 -11.65265 -11.28793 -11.02023 -10.83472 -10.75452 -10.44995 -9.67994 -9.32371 -9.00120 -8.77964 -7.49100 -6.60365 -6.46687 -4.06014 1.86189 2.21170 2.29379 3.02286 3.11505 3.12699 3.18534 3.93769 4.36730 4.85994 4.93866 5.05441 5.22461 5.30414 5.66298 5.72383 5.81677 5.92371 5.98206 6.05866 6.54827 6.61647 6.86014 7.01536 7.24809 7.29235 7.64794 7.95127 8.96893 9.64443 10.70224 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.008911 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.657990 B = 3141.434857 C = 3815.259682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.165 6.165 10 C 0.182 3.818 11 C -0.224 4.224 12 C -0.070 4.070 13 C -0.191 4.191 14 C -0.067 4.067 15 C -0.149 4.149 16 S -0.136 6.136 17 C -0.099 4.099 18 C -0.079 4.079 19 H 0.271 0.729 20 H 0.135 0.865 21 H 0.113 0.887 22 H 0.106 0.894 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -9.874 0.416 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.067 6.067 10 C 0.124 3.876 11 C -0.245 4.245 12 C -0.090 4.090 13 C -0.211 4.211 14 C -0.073 4.073 15 C -0.262 4.262 16 S 0.102 5.898 17 C -0.248 4.248 18 C -0.117 4.117 19 H 0.081 0.919 20 H 0.153 0.847 21 H 0.131 0.869 22 H 0.125 0.875 23 H 0.108 0.892 24 H 0.124 0.876 25 H 0.099 0.901 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.477 -8.992 0.557 9.344 hybrid contribution 1.700 0.189 -0.190 1.721 sum 4.177 -8.803 0.367 9.751 Atomic orbital electron populations 1.70088 1.05966 1.27681 1.45127 1.25324 0.95866 0.98883 0.96366 0.85624 0.79120 0.80218 0.78307 1.19030 1.20075 1.20066 1.21406 0.91900 0.80700 1.53125 0.88860 1.84019 1.34102 1.11230 1.77360 1.18475 0.89861 0.86394 0.92907 1.21086 0.92790 0.99245 1.11422 1.20579 0.98691 0.92008 0.97678 1.20215 0.92041 0.97329 1.11561 1.20417 0.94212 0.92279 1.00423 1.20865 0.94897 0.94102 1.16303 1.86230 1.06437 1.05289 1.91801 1.24241 0.99118 0.96884 1.04532 1.20789 0.92506 0.95988 1.02372 0.91943 0.84705 0.86916 0.87546 0.89180 0.87594 0.90100 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.42 13.67 55.48 0.76 -24.67 15 2 C 0.04 1.13 5.49 -17.52 -0.10 1.04 15 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.28 -5.89 7.11 56.52 0.40 -5.48 15 7 C -0.40 -11.17 9.48 30.87 0.29 -10.87 15 8 H 0.09 2.41 5.21 -52.48 -0.27 2.14 15 9 O -0.16 -4.83 9.74 0.04 0.00 -4.83 15 10 C 0.18 4.60 6.66 -38.99 -0.26 4.34 15 11 C -0.22 -4.93 9.18 -39.44 -0.36 -5.30 15 12 C -0.07 -1.28 9.99 -39.77 -0.40 -1.68 15 13 C -0.19 -3.36 9.97 -39.22 -0.39 -3.76 15 14 C -0.07 -1.27 5.98 -103.80 -0.62 -1.89 15 15 C -0.15 -3.39 6.43 -38.96 -0.25 -3.64 15 16 S -0.14 -2.84 23.06 -107.50 -2.48 -5.32 15 17 C -0.10 -1.42 7.60 37.76 0.29 -1.14 15 18 C -0.08 -1.13 6.28 -27.18 -0.17 -1.30 15 19 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 20 H 0.14 2.90 5.66 -52.49 -0.30 2.60 15 21 H 0.11 1.69 8.06 -52.49 -0.42 1.26 15 22 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.11 1.22 8.14 -51.93 -0.42 0.79 15 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 LS Contribution 242.27 15.07 3.65 3.65 Total: -1.00 -31.70 242.27 -7.30 -39.00 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -2.24 Total: 0.82 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -1.97 Total: -24.19 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: 0.00 Total: -4.83 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.48 Total: -5.32 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.70 -7.30 -39.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439914.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.338 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds