Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48501 * 109.47352 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47282 * 300.00094 * 3 2 1 6 6 H 1.48504 * 109.47187 * 59.99827 * 3 2 1 7 7 C 1.38610 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00108 * 179.97438 * 7 2 1 9 9 O 1.34802 * 120.00587 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00656 * 185.05576 * 9 7 2 11 11 C 1.38684 * 119.98299 * 354.39238 * 10 9 7 12 12 C 1.38188 * 119.21288 * 179.69718 * 11 10 9 13 13 C 1.37771 * 120.61085 * 359.83114 * 12 11 10 14 14 C 1.39673 * 121.20115 * 0.04069 * 13 12 11 15 15 C 1.38755 * 117.83481 * 0.27899 * 14 13 12 16 16 S 1.77432 * 108.31611 * 179.32141 * 15 14 13 17 17 C 1.83304 * 96.60133 * 344.87478 * 16 15 14 18 18 C 1.50896 * 126.79476 * 180.47007 * 14 13 12 19 19 H 0.97006 * 119.99873 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.39430 * 359.71620 * 11 10 9 21 21 H 1.07998 * 119.68853 * 179.84704 * 12 11 10 22 22 H 1.08001 * 119.40274 * 180.02562 * 13 12 11 23 23 H 1.08998 * 111.10199 * 266.87422 * 17 16 15 24 24 H 1.09001 * 111.14157 * 142.78017 * 17 16 15 25 25 H 1.08995 * 109.27889 * 320.81645 * 18 14 13 26 26 H 1.08996 * 109.28554 * 80.26619 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3464 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3679 -0.0016 10 6 2.0702 -3.5044 0.1045 11 6 3.4554 -3.4375 0.0905 12 6 4.1881 -4.6035 0.2059 13 6 3.5548 -5.8199 0.3371 14 6 2.1612 -5.9118 0.3566 15 6 1.4327 -4.7373 0.2334 16 16 -0.2936 -5.1456 0.2696 17 6 -0.0910 -6.9438 -0.0225 18 6 1.3404 -7.1694 0.5034 19 1 -0.4850 0.8401 -0.0004 20 1 3.9555 -2.4855 -0.0092 21 1 5.2672 -4.5605 0.1933 22 1 4.1467 -6.7189 0.4263 23 1 -0.1606 -7.1792 -1.0845 24 1 -0.8158 -7.5197 0.5530 25 1 1.8095 -7.9736 -0.0634 26 1 1.2971 -7.4502 1.5557 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439914.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = -23.237537 kcal Electronic energy + Delta-G solvation = -12544.487455 eV Core-core repulsion = 10293.046143 eV Total energy + Delta-G solvation = -2251.441312 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82525 -38.63526 -35.10356 -34.27321 -30.93363 -30.05112 -27.37231 -25.08560 -23.35262 -22.29025 -19.50504 -19.30508 -17.40171 -16.73314 -16.29239 -16.14093 -15.70802 -15.43266 -15.08855 -14.66225 -13.75386 -13.51969 -13.41249 -13.14024 -12.88262 -12.57600 -12.34105 -12.25262 -12.08487 -11.41535 -10.93794 -10.83734 -10.45071 -9.14738 -8.49339 -8.27031 -6.18122 0.29986 0.62123 0.81436 1.33034 1.42329 1.52390 1.57726 2.15417 2.71825 3.06663 3.39542 3.65460 3.90998 4.15207 4.23293 4.35167 4.50011 4.67045 4.70164 4.89754 4.94206 5.05665 5.12890 5.41138 5.54278 5.66428 5.95913 6.10444 6.93665 7.73084 8.73863 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.008911 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.657990 B = 3141.434857 C = 3815.259682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.024 4.024 3 Si 1.023 2.977 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.418 4.418 8 H 0.105 0.895 9 O -0.223 6.223 10 C 0.135 3.865 11 C -0.238 4.238 12 C -0.066 4.066 13 C -0.169 4.169 14 C -0.066 4.066 15 C -0.174 4.174 16 S -0.231 6.231 17 C -0.069 4.069 18 C -0.077 4.077 19 H 0.273 0.727 20 H 0.129 0.871 21 H 0.156 0.844 22 H 0.158 0.842 23 H 0.106 0.894 24 H 0.141 0.859 25 H 0.124 0.876 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 -12.940 0.580 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.842 3.158 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.494 4.494 8 H 0.122 0.878 9 O -0.129 6.129 10 C 0.080 3.920 11 C -0.259 4.259 12 C -0.085 4.085 13 C -0.189 4.189 14 C -0.072 4.072 15 C -0.287 4.287 16 S 0.008 5.992 17 C -0.217 4.217 18 C -0.114 4.114 19 H 0.082 0.918 20 H 0.146 0.854 21 H 0.174 0.826 22 H 0.176 0.824 23 H 0.124 0.876 24 H 0.159 0.841 25 H 0.142 0.858 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.090 -12.123 0.722 13.168 hybrid contribution 1.002 0.721 -0.227 1.256 sum 6.092 -11.401 0.495 12.936 Atomic orbital electron populations 1.70250 1.08206 1.28765 1.48462 1.26682 0.96854 1.02920 0.95668 0.84477 0.78324 0.74468 0.78552 1.17085 1.19295 1.19365 1.21939 0.92684 0.81356 1.53389 0.87751 1.83996 1.35770 1.12404 1.80745 1.19189 0.91520 0.86450 0.94803 1.21271 0.91886 1.00825 1.11925 1.21085 1.00757 0.90907 0.95772 1.20877 0.91906 0.98758 1.07350 1.21202 0.95163 0.92700 0.98090 1.21284 0.95695 0.94790 1.16918 1.86433 1.07695 1.12899 1.92200 1.24476 1.00447 0.90405 1.06349 1.20935 0.91526 0.94496 1.04471 0.91837 0.85363 0.82608 0.82424 0.87583 0.84067 0.85777 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.58 13.67 21.61 0.30 -58.28 15 2 C -0.02 -1.38 5.49 84.82 0.47 -0.92 15 3 Si 1.02 43.82 29.55 68.60 2.03 45.85 15 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 7 C -0.42 -25.12 9.48 67.91 0.64 -24.47 15 8 H 0.11 5.69 5.21 -2.91 -0.02 5.67 15 9 O -0.22 -14.12 9.74 -22.77 -0.22 -14.34 15 10 C 0.14 7.14 6.66 22.66 0.15 7.29 15 11 C -0.24 -10.56 9.18 22.36 0.21 -10.35 15 12 C -0.07 -2.19 9.99 22.15 0.22 -1.97 15 13 C -0.17 -5.09 9.97 22.51 0.22 -4.86 15 14 C -0.07 -2.26 5.98 -19.33 -0.12 -2.37 15 15 C -0.17 -8.02 6.43 22.67 0.15 -7.87 15 16 S -0.23 -9.82 23.06 -56.49 -1.30 -11.12 15 17 C -0.07 -1.73 7.60 72.37 0.55 -1.18 15 18 C -0.08 -1.79 6.28 30.30 0.19 -1.60 15 19 H 0.27 15.84 8.31 -92.70 -0.77 15.07 15 20 H 0.13 5.68 5.66 -2.91 -0.02 5.66 15 21 H 0.16 3.85 8.06 -2.91 -0.02 3.83 15 22 H 0.16 3.26 8.06 -2.91 -0.02 3.23 15 23 H 0.11 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.14 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.12 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 Total: -1.00 -78.06 242.27 4.67 -73.38 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.19 Total: 12.82 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 2.68 Total: -48.32 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.30 Total: -58.28 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.22 Total: -14.34 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -9.82 SS G_CDS: -1.30 Total: -11.12 kcal Total: -78.06 4.67 -73.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439914.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.145 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds