Wall clock time and date at job start Mon Mar 30 2020 03:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86794 * 120.00418 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00359 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00232 * 3 2 1 6 6 H 1.48498 * 109.47481 * 150.00280 * 3 2 1 7 7 C 1.38620 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99393 * 0.26664 * 7 2 1 9 9 O 1.34804 * 120.00079 * 179.97438 * 7 2 1 10 10 C 1.35699 * 116.99651 * 179.97438 * 9 7 2 11 11 N 1.30719 * 126.17788 * 359.69127 * 10 9 7 12 12 N 1.39855 * 110.02595 * 179.84116 * 11 10 9 13 13 H 0.97001 * 125.40730 * 180.18991 * 12 11 10 14 14 C 1.37106 * 109.18800 * 0.43120 * 12 11 10 15 15 C 1.39280 * 133.70703 * 179.72474 * 14 12 11 16 16 C 1.37813 * 119.71900 * 180.02562 * 15 14 12 17 17 F 1.35102 * 119.70321 * 180.02562 * 16 15 14 18 18 C 1.39166 * 120.59417 * 0.02562 * 16 15 14 19 19 C 1.36460 * 120.59074 * 0.02562 * 18 16 15 20 20 C 1.39792 * 119.82614 * 359.97438 * 19 18 16 21 21 H 0.97000 * 119.99190 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.13650 * 359.97438 * 15 14 12 23 23 H 1.08003 * 119.70751 * 180.02562 * 18 16 15 24 24 H 1.08001 * 120.08696 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4474 2.6526 0.7001 6 1 3.5475 1.4400 0.7000 7 6 2.0089 -1.2005 -0.0005 8 1 1.4688 -2.1357 -0.0053 9 8 3.3570 -1.2005 -0.0011 10 6 3.9729 -2.4097 -0.0010 11 7 3.3830 -3.5762 0.0051 12 7 4.3394 -4.5966 -0.0007 13 1 4.1469 -5.5473 -0.0005 14 6 5.5923 -4.0398 -0.0014 15 6 6.8806 -4.5691 -0.0013 16 6 7.9674 -3.7217 -0.0016 17 9 9.2170 -4.2355 -0.0020 18 6 7.7894 -2.3415 -0.0014 19 6 6.5355 -1.8031 -0.0004 20 6 5.4181 -2.6431 -0.0001 21 1 -0.4849 0.8401 0.0004 22 1 7.0272 -5.6392 -0.0002 23 1 8.6512 -1.6906 -0.0020 24 1 6.4067 -0.7307 -0.0007 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443173.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:25 Heat of formation + Delta-G solvation = -6.453524 kcal Electronic energy + Delta-G solvation = -14121.529427 eV Core-core repulsion = 11336.895499 eV Total energy + Delta-G solvation = -2784.633927 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.92842 -42.19489 -39.47639 -37.62277 -34.51350 -32.86955 -30.46184 -30.26014 -27.41961 -24.21785 -23.34173 -22.22888 -20.16022 -19.36730 -18.05931 -17.82774 -17.36084 -16.78564 -16.29969 -16.19860 -16.02652 -15.06651 -14.68999 -14.55462 -14.33599 -14.24567 -13.57540 -12.78998 -12.46738 -12.43064 -12.17020 -11.91537 -11.42527 -11.16896 -10.58374 -9.58181 -8.91681 -8.50667 -6.29781 -0.18854 0.39926 1.32253 1.34373 1.50673 1.58577 1.76424 2.28316 2.58415 2.59274 2.92588 3.26685 3.55849 3.82299 4.06398 4.21041 4.30853 4.61998 4.91464 4.98222 5.15512 5.30772 5.64523 5.81816 5.93670 6.43272 6.67043 6.89463 7.44418 8.61903 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.046919 B = 0.007674 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.625274 B = 3647.902139 C = 4234.684829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.399 4.399 8 H 0.071 0.929 9 O -0.210 6.210 10 C 0.273 3.727 11 N -0.351 5.351 12 N -0.494 5.494 13 H 0.453 0.547 14 C 0.170 3.830 15 C -0.185 4.185 16 C 0.155 3.845 17 F -0.131 7.131 18 C -0.193 4.193 19 C -0.004 4.004 20 C -0.210 4.210 21 H 0.287 0.713 22 H 0.169 0.831 23 H 0.169 0.831 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.884 -5.175 0.007 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.177 1.177 7 C -0.476 4.476 8 H 0.089 0.911 9 O -0.104 6.104 10 C 0.060 3.940 11 N -0.191 5.191 12 N -0.213 5.213 13 H 0.300 0.700 14 C 0.051 3.949 15 C -0.209 4.209 16 C 0.133 3.867 17 F -0.109 7.109 18 C -0.213 4.213 19 C -0.024 4.024 20 C -0.219 4.219 21 H 0.096 0.904 22 H 0.186 0.814 23 H 0.186 0.814 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 15.690 -5.266 0.015 16.550 hybrid contribution 0.093 0.118 -0.021 0.152 sum 15.783 -5.147 -0.006 16.601 Atomic orbital electron populations 1.69758 1.07081 1.29801 1.49554 1.25349 0.95978 1.02366 0.95108 0.85179 0.79067 0.76682 0.79641 1.18672 1.19019 1.17662 1.20493 0.77135 0.96226 1.53730 0.91116 1.83675 1.21955 1.20992 1.83823 1.22071 0.90326 0.85832 0.95723 1.76976 1.14138 0.95827 1.32178 1.45402 0.99846 1.07933 1.68113 0.69989 1.18535 0.88137 0.91058 0.97154 1.19937 0.86918 1.01759 1.12243 1.17331 0.78744 0.91744 0.98857 1.91516 1.38281 1.87606 1.93497 1.20772 0.98266 0.93369 1.08909 1.20386 0.89498 1.00318 0.92190 1.19473 0.90059 0.94418 1.17947 0.90372 0.81394 0.81356 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.63 13.97 21.61 0.30 -55.33 14 2 C 0.01 0.64 5.49 84.82 0.47 1.10 14 3 Si 0.97 44.13 28.61 68.60 1.96 46.09 14 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 14 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 14 6 H -0.25 -11.09 7.11 99.48 0.71 -10.38 14 7 C -0.40 -24.12 10.19 67.91 0.69 -23.43 14 8 H 0.07 4.70 7.28 -2.91 -0.02 4.68 14 9 O -0.21 -11.41 8.66 -21.92 -0.19 -11.60 14 10 C 0.27 13.16 8.09 86.98 0.70 13.86 14 11 N -0.35 -16.47 11.50 -166.91 -1.92 -18.39 14 12 N -0.49 -16.93 7.36 -51.54 -0.38 -17.31 14 13 H 0.45 11.54 8.96 -213.48 -1.91 9.63 14 14 C 0.17 5.44 7.33 39.19 0.29 5.72 14 15 C -0.19 -4.43 10.05 22.42 0.23 -4.21 14 16 C 0.16 3.58 7.28 22.39 0.16 3.74 14 17 F -0.13 -2.78 17.25 44.97 0.78 -2.01 14 18 C -0.19 -4.45 9.94 22.08 0.22 -4.23 14 19 C 0.00 -0.11 10.05 22.23 0.22 0.11 14 20 C -0.21 -7.92 6.37 -20.16 -0.13 -8.05 14 21 H 0.29 15.72 8.31 -92.71 -0.77 14.95 14 22 H 0.17 2.88 8.06 -2.91 -0.02 2.86 14 23 H 0.17 2.77 8.06 -2.91 -0.02 2.74 14 24 H 0.15 3.99 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -69.40 232.20 2.75 -66.65 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -0.65 Total: 7.27 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 2.85 Total: -15.37 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -2.00 Total: -91.04 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.19 Total: -11.60 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.96 Total: 46.09 kcal Total: -69.40 2.75 -66.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443173.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.196 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds