Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86803 * 120.00267 * 2 1 4 4 H 1.48495 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46788 * 300.00260 * 3 2 1 6 6 H 1.48497 * 109.46840 * 60.00036 * 3 2 1 7 7 C 1.38853 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00388 * 180.02562 * 7 2 1 9 9 N 1.36886 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.38418 * 120.00328 * 179.97438 * 9 7 2 11 11 N 1.33019 * 120.66448 * 0.02791 * 10 9 7 12 12 C 1.31993 * 120.68666 * 179.97438 * 11 10 9 13 13 N 1.31096 * 122.74392 * 0.23237 * 12 11 10 14 14 C 1.34919 * 121.09154 * 359.53222 * 13 12 11 15 15 N 1.33444 * 130.44803 * 180.14758 * 14 13 12 16 16 C 1.28330 * 117.98087 * 180.28950 * 15 14 13 17 17 S 1.70756 * 111.35068 * 359.97438 * 16 15 14 18 18 C 1.39946 * 117.60739 * 0.44189 * 14 13 12 19 19 H 0.96997 * 120.00073 * 0.02562 * 1 2 3 20 20 H 0.97007 * 119.99929 * 0.02562 * 9 7 2 21 21 H 1.08003 * 118.62291 * 179.97438 * 12 11 10 22 22 H 1.08006 * 124.32571 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7093 1.3464 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0095 -1.2025 -0.0005 8 1 3.0896 -1.2026 -0.0001 9 7 1.3251 -2.3880 -0.0005 10 6 2.0171 -3.5867 -0.0016 11 7 3.3472 -3.6023 -0.0021 12 6 4.0076 -4.7451 -0.0026 13 7 3.4076 -5.9107 -0.0071 14 6 2.0614 -6.0014 -0.0022 15 7 1.2659 -7.0729 -0.0027 16 6 -0.0029 -6.8807 -0.0028 17 16 -0.3794 -5.2152 -0.0014 18 6 1.3310 -4.8077 -0.0016 19 1 -0.4850 0.8400 -0.0004 20 1 0.3550 -2.3879 -0.0005 21 1 5.0873 -4.7188 -0.0034 22 1 -0.7386 -7.6714 -0.0028 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501121.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 85.030883 kcal Electronic energy + Delta-G solvation = -12272.737070 eV Core-core repulsion = 9954.743037 eV Total energy + Delta-G solvation = -2317.994033 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.21492 -37.53014 -35.73711 -32.67104 -30.84397 -29.41882 -25.61392 -24.73931 -23.11015 -21.21555 -18.73911 -17.97777 -16.72480 -16.15704 -15.44716 -14.79949 -14.72704 -14.02078 -13.71784 -13.25723 -12.79039 -12.08222 -11.80329 -11.64560 -11.06213 -10.81339 -10.55179 -9.73507 -9.65970 -9.33699 -8.88573 -8.66813 -8.09558 -7.41311 -6.96907 -4.14806 0.93843 1.77488 1.99010 2.23825 2.91836 3.02674 3.09635 3.16426 3.78046 4.15175 4.46411 4.56108 5.01227 5.17889 5.44370 5.59672 5.89897 6.37793 7.00451 7.11324 7.44410 7.79382 8.16218 8.39352 8.80654 8.95146 9.45848 10.16845 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.042255 B = 0.009000 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.489300 B = 3110.478325 C = 3763.125744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.024 3.976 3 Si 0.945 3.055 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.284 4.284 8 H 0.125 0.875 9 N -0.486 5.486 10 C 0.401 3.599 11 N -0.590 5.590 12 C 0.361 3.639 13 N -0.593 5.593 14 C 0.347 3.653 15 N -0.471 5.471 16 C 0.068 3.932 17 S 0.109 5.891 18 C -0.352 4.352 19 H 0.284 0.716 20 H 0.408 0.592 21 H 0.185 0.815 22 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 -3.924 0.008 4.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.416 4.416 8 H 0.143 0.857 9 N -0.090 5.090 10 C 0.146 3.854 11 N -0.324 5.324 12 C 0.066 3.934 13 N -0.325 5.325 14 C 0.100 3.900 15 N -0.187 5.187 16 C -0.237 4.237 17 S 0.356 5.644 18 C -0.483 4.483 19 H 0.094 0.906 20 H 0.245 0.755 21 H 0.202 0.798 22 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.066 -3.508 0.004 4.071 hybrid contribution -0.203 0.688 0.004 0.717 sum -2.268 -2.820 0.007 3.619 Atomic orbital electron populations 1.69661 1.06423 1.29808 1.44766 1.25645 0.95887 1.00947 0.95818 0.85536 0.79895 0.79301 0.78256 1.18379 1.20109 1.20116 1.20291 0.94520 0.81354 1.45470 0.85727 1.41153 1.08438 1.02482 1.56908 1.17270 0.88229 0.83207 0.96693 1.68137 1.05107 1.29889 1.29308 1.24172 0.99745 0.81623 0.87906 1.67957 1.05620 1.29041 1.29905 1.19210 0.91521 0.84219 0.95098 1.65463 1.03107 1.32327 1.17826 1.28197 0.94869 0.99960 1.00684 1.83567 1.04893 1.03856 1.72112 1.24598 0.96825 1.00678 1.26217 0.90625 0.75477 0.79808 0.78162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.48 13.05 55.49 0.72 -20.76 14 2 C 0.02 0.58 5.50 -17.45 -0.10 0.49 14 3 Si 0.95 18.68 29.55 -169.99 -5.02 13.65 14 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 14 6 H -0.28 -5.40 7.11 56.52 0.40 -4.99 14 7 C -0.28 -7.09 9.72 -15.07 -0.15 -7.24 14 8 H 0.13 3.14 7.12 -52.48 -0.37 2.77 14 9 N -0.49 -11.82 5.41 -10.93 -0.06 -11.88 14 10 C 0.40 9.53 7.48 -154.71 -1.16 8.37 14 11 N -0.59 -13.77 9.27 -13.83 -0.13 -13.89 14 12 C 0.36 7.55 12.22 -92.58 -1.13 6.42 14 13 N -0.59 -13.34 10.50 -14.60 -0.15 -13.49 14 14 C 0.35 7.75 8.17 -157.65 -1.29 6.47 14 15 N -0.47 -9.37 10.53 -14.54 -0.15 -9.52 14 16 C 0.07 1.05 12.13 51.30 0.62 1.67 14 17 S 0.11 1.85 22.89 -107.50 -2.46 -0.61 14 18 C -0.35 -7.71 6.51 -38.26 -0.25 -7.96 14 19 H 0.28 6.49 8.31 -40.82 -0.34 6.16 14 20 H 0.41 9.76 7.64 -40.82 -0.31 9.45 14 21 H 0.19 3.02 8.06 -52.48 -0.42 2.60 14 22 H 0.20 2.03 8.06 -52.48 -0.42 1.60 14 LS Contribution 223.43 15.07 3.37 3.37 Total: -1.00 -29.01 223.43 -8.00 -37.01 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -0.67 Total: 7.91 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -3.45 Total: 8.22 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: 0.23 Total: -69.54 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.65 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.46 Total: -0.61 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.01 -8.00 -37.01 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501121.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.039 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds