Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86803 * 120.00267 * 2 1 4 4 H 1.48495 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46788 * 300.00260 * 3 2 1 6 6 H 1.48497 * 109.46840 * 60.00036 * 3 2 1 7 7 C 1.38853 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00388 * 180.02562 * 7 2 1 9 9 N 1.36886 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.38418 * 120.00328 * 179.97438 * 9 7 2 11 11 N 1.33019 * 120.66448 * 0.02791 * 10 9 7 12 12 C 1.31993 * 120.68666 * 179.97438 * 11 10 9 13 13 N 1.31096 * 122.74392 * 0.23237 * 12 11 10 14 14 C 1.34919 * 121.09154 * 359.53222 * 13 12 11 15 15 N 1.33444 * 130.44803 * 180.14758 * 14 13 12 16 16 C 1.28330 * 117.98087 * 180.28950 * 15 14 13 17 17 S 1.70756 * 111.35068 * 359.97438 * 16 15 14 18 18 C 1.39946 * 117.60739 * 0.44189 * 14 13 12 19 19 H 0.96997 * 120.00073 * 0.02562 * 1 2 3 20 20 H 0.97007 * 119.99929 * 0.02562 * 9 7 2 21 21 H 1.08003 * 118.62291 * 179.97438 * 12 11 10 22 22 H 1.08006 * 124.32571 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7093 1.3464 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0095 -1.2025 -0.0005 8 1 3.0896 -1.2026 -0.0001 9 7 1.3251 -2.3880 -0.0005 10 6 2.0171 -3.5867 -0.0016 11 7 3.3472 -3.6023 -0.0021 12 6 4.0076 -4.7451 -0.0026 13 7 3.4076 -5.9107 -0.0071 14 6 2.0614 -6.0014 -0.0022 15 7 1.2659 -7.0729 -0.0027 16 6 -0.0029 -6.8807 -0.0028 17 16 -0.3794 -5.2152 -0.0014 18 6 1.3310 -4.8077 -0.0016 19 1 -0.4850 0.8400 -0.0004 20 1 0.3550 -2.3879 -0.0005 21 1 5.0873 -4.7188 -0.0034 22 1 -0.7386 -7.6714 -0.0028 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501121.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 66.510895 kcal Electronic energy + Delta-G solvation = -12273.540157 eV Core-core repulsion = 9954.743037 eV Total energy + Delta-G solvation = -2318.797120 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.027 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.85739 -39.13217 -37.45730 -34.43107 -32.55420 -31.08598 -27.28757 -26.35197 -24.75051 -22.84342 -20.47022 -19.60303 -18.33875 -17.76060 -17.05171 -16.45939 -16.44223 -15.52075 -15.34224 -14.76871 -14.43828 -13.69561 -13.38900 -13.31290 -12.66487 -12.64347 -12.09109 -11.39557 -11.33018 -10.80111 -10.50199 -10.30304 -9.82515 -9.03996 -8.72632 -6.01375 -0.54502 0.30199 0.34756 0.77512 1.36724 1.41750 1.56786 1.58961 2.15740 2.70290 2.75259 2.81581 3.26546 3.66307 3.91248 4.15815 4.27293 4.82465 5.22862 5.40857 5.72228 6.12244 6.50509 6.67371 7.01521 7.19953 7.72949 8.42894 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.042255 B = 0.009000 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.489300 B = 3110.478325 C = 3763.125744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.012 4.012 3 Si 1.008 2.992 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.314 4.314 8 H 0.113 0.887 9 N -0.504 5.504 10 C 0.401 3.599 11 N -0.614 5.614 12 C 0.359 3.641 13 N -0.605 5.605 14 C 0.332 3.668 15 N -0.503 5.503 16 C 0.103 3.897 17 S 0.155 5.845 18 C -0.394 4.394 19 H 0.287 0.713 20 H 0.406 0.594 21 H 0.224 0.776 22 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -4.960 0.007 5.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.215 4.215 3 Si 0.830 3.170 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.446 4.446 8 H 0.131 0.869 9 N -0.109 5.109 10 C 0.146 3.854 11 N -0.348 5.348 12 C 0.064 3.936 13 N -0.336 5.336 14 C 0.084 3.916 15 N -0.220 5.220 16 C -0.200 4.200 17 S 0.402 5.598 18 C -0.525 4.525 19 H 0.097 0.903 20 H 0.242 0.758 21 H 0.240 0.760 22 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -2.684 -4.566 0.003 5.296 hybrid contribution -0.069 0.688 0.003 0.691 sum -2.753 -3.878 0.006 4.756 Atomic orbital electron populations 1.69717 1.07430 1.30634 1.46208 1.26424 0.96638 1.03392 0.95079 0.84625 0.78533 0.75464 0.78369 1.18393 1.19557 1.19568 1.20307 0.94225 0.82289 1.47745 0.86897 1.41101 1.08176 1.02527 1.59111 1.17660 0.88842 0.83854 0.95037 1.68172 1.05536 1.31193 1.29943 1.24947 1.01307 0.80718 0.86607 1.67998 1.06421 1.29647 1.29546 1.19658 0.91878 0.85229 0.94812 1.65590 1.04451 1.31503 1.20480 1.29288 0.94451 1.00821 0.95482 1.83451 1.00911 1.04146 1.71276 1.24820 1.00223 0.99880 1.27562 0.90274 0.75791 0.75970 0.72217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.22 13.05 21.65 0.28 -44.94 14 2 C -0.01 -0.57 5.50 84.89 0.47 -0.11 14 3 Si 1.01 38.57 29.55 68.60 2.03 40.60 14 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 14 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 14 6 H -0.27 -10.02 7.11 99.48 0.71 -9.32 14 7 C -0.31 -16.13 9.72 84.05 0.82 -15.32 14 8 H 0.11 5.89 7.12 -2.91 -0.02 5.87 14 9 N -0.50 -25.09 5.41 -188.50 -1.02 -26.11 14 10 C 0.40 19.29 7.48 133.30 1.00 20.29 14 11 N -0.61 -28.90 9.27 -197.66 -1.83 -30.73 14 12 C 0.36 14.82 12.22 181.03 2.21 17.03 14 13 N -0.61 -26.72 10.50 -200.11 -2.10 -28.82 14 14 C 0.33 14.50 8.17 134.29 1.10 15.59 14 15 N -0.50 -18.72 10.53 -199.91 -2.10 -20.83 14 16 C 0.10 2.78 12.13 130.75 1.59 4.36 14 17 S 0.15 4.86 22.89 -56.49 -1.29 3.57 14 18 C -0.39 -17.03 6.51 23.13 0.15 -16.88 14 19 H 0.29 13.29 8.31 -92.71 -0.77 12.52 14 20 H 0.41 19.89 7.64 -92.70 -0.71 19.19 14 21 H 0.22 6.99 8.06 -2.91 -0.02 6.97 14 22 H 0.26 3.58 8.06 -2.91 -0.02 3.56 14 Total: -1.00 -63.78 223.43 1.86 -61.91 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.57 Total: 20.39 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 7.33 Total: 24.97 kcal Atomic # 7 Polarization: -144.66 SS G_CDS: -6.77 Total: -151.44 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.29 Total: 3.57 kcal Total: -63.78 1.86 -61.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501121.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.425 kcal (2) G-P(sol) polarization free energy of solvation -63.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds