Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47027 * 264.71234 * 3 2 1 5 5 H 1.48507 * 109.46802 * 24.71101 * 3 2 1 6 6 H 1.48496 * 109.47014 * 144.70787 * 3 2 1 7 7 C 1.38915 * 120.00200 * 179.72102 * 2 1 3 8 8 H 1.07998 * 120.00270 * 186.84593 * 7 2 1 9 9 N 1.36994 * 120.00069 * 6.84833 * 7 2 1 10 10 N 1.39866 * 125.49327 * 6.23334 * 9 7 2 11 11 C 1.30473 * 110.09584 * 179.80200 * 10 9 7 12 12 C 1.46054 * 107.86087 * 0.45142 * 11 10 9 13 13 C 1.37683 * 125.49772 * 186.53895 * 9 7 2 14 14 C 1.38991 * 133.72753 * 0.02706 * 13 9 7 15 15 C 1.37866 * 119.91496 * 180.02562 * 14 13 9 16 16 C 1.38796 * 120.66092 * 359.91234 * 15 14 13 17 17 C 1.37779 * 120.44880 * 0.06278 * 16 15 14 18 18 Cl 1.73596 * 120.18738 * 179.97438 * 17 16 15 19 19 H 0.96996 * 119.99946 * 0.02562 * 1 2 3 20 20 H 1.07998 * 126.06592 * 180.16367 * 11 10 9 21 21 H 1.07993 * 120.04431 * 359.95572 * 14 13 9 22 22 H 1.08001 * 119.66989 * 179.97438 * 15 14 13 23 23 H 1.08002 * 119.77350 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.6070 1.9820 -1.3941 5 1 1.3937 2.6824 0.5853 6 1 3.4849 1.4751 0.8089 7 6 2.0084 -1.2030 0.0059 8 1 3.0826 -1.2058 0.1174 9 7 1.3308 -2.3859 -0.1299 10 7 -0.0350 -2.5126 -0.4034 11 6 -0.3630 -3.7735 -0.4734 12 6 0.8397 -4.5638 -0.2245 13 6 1.8832 -3.6416 -0.0132 14 6 3.1662 -4.1060 0.2517 15 6 3.4093 -5.4620 0.3045 16 6 2.3834 -6.3736 0.0973 17 6 1.1037 -5.9366 -0.1662 18 17 -0.1742 -7.0828 -0.4250 19 1 -0.4850 0.8400 -0.0004 20 1 -1.3498 -4.1635 -0.6746 21 1 3.9718 -3.4055 0.4147 22 1 4.4078 -5.8185 0.5102 23 1 2.5899 -7.4328 0.1424 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260532096.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = 78.226412 kcal Electronic energy + Delta-G solvation = -12369.449972 eV Core-core repulsion = 10016.824417 eV Total energy + Delta-G solvation = -2352.625555 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.96033 -36.56693 -35.47667 -33.57173 -31.21433 -28.82118 -28.65012 -25.14557 -22.02596 -21.06986 -20.60876 -17.64677 -16.18676 -15.53720 -14.82702 -14.52660 -13.89079 -13.69058 -13.45445 -12.63574 -12.13667 -11.88685 -11.38584 -11.29987 -11.04103 -10.68608 -10.50065 -10.41942 -10.29948 -9.64017 -9.21209 -8.78047 -7.58849 -7.27581 -6.71127 -4.25445 1.77331 2.35860 2.81648 2.98489 3.00115 3.03999 3.69376 3.80664 4.29604 4.49826 4.93298 5.61368 5.64629 5.91019 5.93793 6.10815 6.57036 6.62849 6.72416 6.97054 7.06137 7.19194 7.41963 7.68445 7.84466 8.44650 9.10711 9.31348 10.26803 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.049900 B = 0.008539 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.984608 B = 3278.267183 C = 3822.452671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.316 4.316 8 H 0.119 0.881 9 N -0.172 5.172 10 N -0.205 5.205 11 C -0.025 4.025 12 C -0.194 4.194 13 C 0.050 3.950 14 C -0.103 4.103 15 C -0.112 4.112 16 C -0.178 4.178 17 C 0.043 3.957 18 Cl -0.099 7.099 19 H 0.277 0.723 20 H 0.170 0.830 21 H 0.115 0.885 22 H 0.119 0.881 23 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -5.643 0.143 6.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.448 4.448 8 H 0.137 0.863 9 N 0.058 4.942 10 N -0.027 5.027 11 C -0.209 4.209 12 C -0.206 4.206 13 C -0.072 4.072 14 C -0.124 4.124 15 C -0.134 4.134 16 C -0.200 4.200 17 C 0.014 3.986 18 Cl -0.070 7.070 19 H 0.088 0.912 20 H 0.187 0.813 21 H 0.133 0.867 22 H 0.137 0.863 23 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.770 -4.251 0.036 5.074 hybrid contribution 0.477 -0.162 0.056 0.507 sum 3.247 -4.413 0.092 5.480 Atomic orbital electron populations 1.70165 1.06189 1.28428 1.35842 1.25610 0.95764 1.00329 0.95463 0.85794 0.79338 0.79534 0.79275 1.19382 1.20024 1.18747 1.19861 0.92514 0.80690 1.51699 0.86345 1.44649 1.03918 1.02790 1.42813 1.77544 0.91820 1.16548 1.16773 1.24721 0.97459 0.90299 1.08427 1.19214 0.94596 0.91152 1.15618 1.18532 0.94441 0.85891 1.08320 1.19941 0.93773 0.95169 1.03561 1.20442 0.97926 0.91840 1.03198 1.20352 0.91082 0.99102 1.09421 1.20176 0.88319 0.87426 1.02682 1.98290 1.52786 1.60750 1.95185 0.91215 0.81257 0.86719 0.86326 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.94 11.85 55.49 0.66 -20.28 14 2 C 0.04 1.12 5.48 -17.50 -0.10 1.02 14 3 Si 0.94 18.55 29.56 -169.99 -5.02 13.53 14 4 H -0.27 -5.27 7.11 56.52 0.40 -4.86 14 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 14 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 14 7 C -0.32 -8.22 10.12 -14.99 -0.15 -8.38 14 8 H 0.12 2.79 7.81 -52.49 -0.41 2.38 14 9 N -0.17 -4.65 3.74 -9.51 -0.04 -4.68 14 10 N -0.21 -5.61 10.25 31.93 0.33 -5.29 14 11 C -0.03 -0.60 12.20 -15.00 -0.18 -0.78 14 12 C -0.19 -4.51 6.20 -105.15 -0.65 -5.16 14 13 C 0.05 1.22 6.81 -83.97 -0.57 0.65 14 14 C -0.10 -2.10 9.97 -39.44 -0.39 -2.49 14 15 C -0.11 -1.98 10.02 -39.51 -0.40 -2.38 14 16 C -0.18 -3.20 9.81 -39.54 -0.39 -3.59 14 17 C 0.04 0.86 6.36 -39.12 -0.25 0.61 14 18 Cl -0.10 -1.70 28.90 -51.86 -1.50 -3.20 14 19 H 0.28 6.82 8.31 -40.82 -0.34 6.48 14 20 H 0.17 3.51 8.06 -52.49 -0.42 3.08 14 21 H 0.11 2.12 8.02 -52.49 -0.42 1.70 14 22 H 0.12 1.66 8.06 -52.49 -0.42 1.23 14 23 H 0.12 1.77 8.06 -52.49 -0.42 1.34 14 LS Contribution 230.89 15.07 3.48 3.48 Total: -1.00 -28.75 230.89 -6.41 -35.16 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -1.23 Total: 1.78 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.08 Total: -20.49 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.95 Total: -30.25 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -1.50 Total: -3.20 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.75 -6.41 -35.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532096.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.383 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds