Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86791 * 119.99967 * 2 1 4 4 H 1.48507 * 109.46905 * 269.99658 * 3 2 1 5 5 H 1.48502 * 109.47588 * 29.99697 * 3 2 1 6 6 H 1.48502 * 109.47402 * 149.99948 * 3 2 1 7 7 C 1.38851 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00405 * 0.02562 * 7 2 1 9 9 N 1.36874 * 119.99577 * 180.02562 * 7 2 1 10 10 C 1.38624 * 120.00152 * 180.02562 * 9 7 2 11 11 N 1.30547 * 126.38677 * 359.97155 * 10 9 7 12 12 O 1.41332 * 109.60469 * 180.02562 * 11 10 9 13 13 C 1.34960 * 109.49089 * 0.02562 * 12 11 10 14 14 C 1.38963 * 133.18446 * 180.02562 * 13 12 11 15 15 C 1.37783 * 119.97310 * 180.25532 * 14 13 12 16 16 C 1.38943 * 120.55236 * 359.45270 * 15 14 13 17 17 F 1.35107 * 119.86083 * 180.28352 * 16 15 14 18 18 C 1.37878 * 120.28109 * 0.56547 * 16 15 14 19 19 C 1.39526 * 119.67570 * 359.71411 * 18 16 15 20 20 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 21 21 H 0.97006 * 119.99951 * 0.02562 * 9 7 2 22 22 H 1.08002 * 120.01044 * 359.97245 * 14 13 12 23 23 H 1.07996 * 119.72316 * 179.74436 * 15 14 13 24 24 H 1.07995 * 120.16661 * 179.73220 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0463 -1.4002 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4402 0.7000 7 6 2.0096 -1.2025 0.0005 8 1 1.4696 -2.1378 0.0005 9 7 3.3783 -1.2025 0.0011 10 6 4.0715 -2.4030 0.0011 11 7 3.5486 -3.5992 0.0011 12 8 4.5786 -4.5669 0.0017 13 6 5.7780 -3.9481 0.0026 14 6 7.0877 -4.4124 0.0030 15 6 8.1354 -3.5175 0.0092 16 6 7.8953 -2.1490 0.0038 17 9 8.9331 -1.2840 0.0043 18 6 6.6024 -1.6700 0.0038 19 6 5.5334 -2.5667 0.0032 20 1 -0.4850 0.8400 -0.0004 21 1 3.8633 -0.3624 0.0014 22 1 7.2843 -5.4744 0.0029 23 1 9.1516 -3.8829 0.0137 24 1 6.4179 -0.6059 0.0039 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260593513.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = 24.126738 kcal Electronic energy + Delta-G solvation = -14149.529213 eV Core-core repulsion = 11366.221345 eV Total energy + Delta-G solvation = -2783.307868 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.055 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.72544 -40.84357 -36.96459 -36.11894 -32.78277 -31.18668 -29.73061 -29.14532 -24.98414 -23.09266 -22.26554 -20.19572 -18.89866 -17.34863 -17.28995 -16.35965 -15.60385 -15.05779 -14.94030 -14.91634 -14.08513 -13.92036 -13.37650 -13.16863 -12.40003 -12.33722 -12.26193 -11.49257 -11.20821 -10.97535 -10.88522 -10.31068 -10.08556 -9.61206 -8.86888 -8.27065 -7.71469 -6.62019 -4.01677 0.94100 1.35897 2.82504 2.90067 2.99274 3.09160 3.40293 3.75131 3.85933 4.04233 4.37523 4.70775 4.92630 4.94163 5.07107 5.33521 5.54616 5.96559 6.00889 6.13803 6.23518 6.44337 6.90404 7.19013 7.74300 8.17520 8.44432 8.98553 9.09154 10.48709 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.008716 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.618285 B = 3211.698041 C = 4023.473158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.298 4.298 8 H 0.126 0.874 9 N -0.534 5.534 10 C 0.322 3.678 11 N -0.383 5.383 12 O -0.117 6.117 13 C 0.097 3.903 14 C -0.117 4.117 15 C -0.104 4.104 16 C 0.046 3.954 17 F -0.144 7.144 18 C -0.085 4.085 19 C -0.160 4.160 20 H 0.280 0.720 21 H 0.390 0.610 22 H 0.142 0.858 23 H 0.142 0.858 24 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.006 -1.300 -0.009 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.428 4.428 8 H 0.144 0.856 9 N -0.159 5.159 10 C 0.055 3.945 11 N -0.169 5.169 12 O -0.114 6.114 13 C 0.041 3.959 14 C -0.137 4.137 15 C -0.123 4.123 16 C 0.027 3.973 17 F -0.123 7.123 18 C -0.106 4.106 19 C -0.165 4.165 20 H 0.091 0.909 21 H 0.226 0.774 22 H 0.159 0.841 23 H 0.160 0.840 24 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.675 -1.938 -0.010 12.822 hybrid contribution 1.278 2.019 0.022 2.389 sum 13.952 0.081 0.013 13.952 Atomic orbital electron populations 1.69658 1.05572 1.28321 1.46180 1.25023 0.95639 0.98332 0.97127 0.86619 0.79895 0.83514 0.79422 1.19029 1.19445 1.19240 1.19555 0.78045 0.97287 1.47962 0.85649 1.40241 1.06394 1.01311 1.67946 1.20707 0.86513 0.89349 0.97979 1.80620 0.98343 0.94412 1.43518 1.89142 1.09819 1.30575 1.81837 1.20244 0.89924 0.91023 0.94683 1.19730 0.87211 1.00487 1.06316 1.20853 0.99877 0.90817 1.00786 1.17148 0.83513 0.87270 1.09393 1.91470 1.56704 1.69401 1.94687 1.20487 0.89945 1.00235 0.99977 1.20396 0.92057 0.93749 1.10319 0.90929 0.77396 0.84053 0.83993 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 13.96 55.49 0.77 -22.78 14 2 C 0.05 1.17 5.50 -17.45 -0.10 1.08 14 3 Si 0.88 18.28 27.73 -169.99 -4.71 13.56 14 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 14 5 H -0.27 -5.59 7.11 56.52 0.40 -5.18 14 6 H -0.27 -5.11 6.52 56.52 0.37 -4.74 14 7 C -0.30 -7.90 10.30 -15.07 -0.16 -8.05 14 8 H 0.13 3.72 7.64 -52.49 -0.40 3.31 14 9 N -0.53 -12.37 5.24 -9.51 -0.05 -12.42 14 10 C 0.32 7.32 8.09 -153.68 -1.24 6.08 14 11 N -0.38 -9.38 12.19 32.51 0.40 -8.98 14 12 O -0.12 -2.53 12.06 7.29 0.09 -2.45 14 13 C 0.10 1.78 7.47 -38.54 -0.29 1.50 14 14 C -0.12 -1.62 10.06 -39.48 -0.40 -2.02 14 15 C -0.10 -1.30 9.99 -39.49 -0.39 -1.69 14 16 C 0.05 0.67 7.29 -39.45 -0.29 0.38 14 17 F -0.14 -2.02 17.26 2.25 0.04 -1.98 14 18 C -0.09 -1.38 10.07 -39.23 -0.40 -1.77 14 19 C -0.16 -3.07 6.35 -105.05 -0.67 -3.73 14 20 H 0.28 7.04 8.31 -40.82 -0.34 6.70 14 21 H 0.39 8.02 5.88 -40.82 -0.24 7.78 14 22 H 0.14 1.53 8.06 -52.49 -0.42 1.10 14 23 H 0.14 1.30 8.06 -52.49 -0.42 0.87 14 24 H 0.13 1.94 8.06 -52.49 -0.42 1.52 14 LS Contribution 230.29 15.07 3.47 3.47 Total: -1.00 -28.47 230.29 -5.00 -33.47 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -1.08 Total: 6.35 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.92 Total: -8.24 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 1.12 Total: -44.19 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.09 Total: -2.45 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.71 Total: 13.56 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.47 -5.00 -33.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593513.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.596 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds