Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00158 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00006 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00041 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.27886 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71835 * 7 2 1 9 9 N 1.36963 * 119.99552 * 179.72486 * 7 2 1 10 10 C 1.37607 * 119.99646 * 180.02562 * 9 7 2 11 11 N 1.30933 * 124.96507 * 179.97438 * 10 9 7 12 12 C 1.35942 * 108.72973 * 179.97438 * 11 10 9 13 13 C 1.39659 * 133.64325 * 180.02562 * 12 11 10 14 14 C 1.37914 * 119.70655 * 179.97438 * 13 12 11 15 15 F 1.35104 * 119.82034 * 179.97438 * 14 13 12 16 16 C 1.38883 * 120.35446 * 0.02562 * 14 13 12 17 17 C 1.38014 * 120.45639 * 359.97438 * 16 14 13 18 18 C 1.38546 * 119.93125 * 0.04351 * 17 16 14 19 19 O 1.34513 * 124.97254 * 359.69010 * 10 9 7 20 20 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99937 * 359.97438 * 9 7 2 22 22 H 1.08000 * 120.14644 * 359.95235 * 13 12 11 23 23 H 1.07998 * 119.77357 * 179.97438 * 16 14 13 24 24 H 1.07996 * 120.03454 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0464 1.4001 5 1 3.5470 1.4402 -0.7000 6 1 1.4470 2.6527 -0.7000 7 6 2.0095 -1.2022 -0.0059 8 1 1.4695 -2.1375 -0.0058 9 7 3.3791 -1.2021 -0.0115 10 6 4.0671 -2.3938 -0.0179 11 7 5.3715 -2.5072 -0.0241 12 6 5.6949 -3.8276 -0.0286 13 6 6.9059 -4.5233 -0.0352 14 6 6.9017 -5.9024 -0.0379 15 9 8.0718 -6.5778 -0.0449 16 6 5.7011 -6.6006 -0.0346 17 6 4.4983 -5.9239 -0.0280 18 6 4.4846 -4.5385 -0.0256 19 8 3.4981 -3.6126 -0.0131 20 1 -0.4850 0.8400 0.0004 21 1 3.8641 -0.3620 -0.0119 22 1 7.8414 -3.9837 -0.0386 23 1 5.7088 -7.6806 -0.0371 24 1 3.5688 -6.4737 -0.0250 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602801.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = -17.540521 kcal Electronic energy + Delta-G solvation = -14049.519613 eV Core-core repulsion = 11264.404918 eV Total energy + Delta-G solvation = -2785.114696 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.86395 -43.89556 -38.82218 -37.49475 -35.37753 -34.06754 -31.36312 -29.93852 -26.87637 -24.21970 -23.44537 -22.75831 -20.64420 -19.29642 -18.83722 -18.02897 -17.73936 -16.81534 -16.70753 -16.46500 -15.78095 -15.14004 -14.99401 -14.32964 -14.22531 -13.81280 -13.68893 -13.04707 -12.79682 -12.67047 -12.35248 -12.11033 -11.70318 -11.21124 -10.75078 -9.59284 -8.99189 -8.63315 -6.14394 -0.13390 0.15506 1.18691 1.29180 1.30655 1.44641 1.61782 2.08429 2.46183 2.60643 2.89864 3.25144 3.59318 3.96610 4.09714 4.30109 4.45855 4.59470 5.00964 5.10817 5.17927 5.29407 5.40037 5.67372 5.78577 6.27569 6.49217 6.91592 7.25953 8.50493 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.069801 B = 0.006467 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.041771 B = 4328.842582 C = 4720.039869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.254 1.254 5 H -0.246 1.246 6 H -0.261 1.261 7 C -0.340 4.340 8 H 0.083 0.917 9 N -0.517 5.517 10 C 0.476 3.524 11 N -0.610 5.610 12 C 0.092 3.908 13 C -0.154 4.154 14 C 0.117 3.883 15 F -0.134 7.134 16 C -0.155 4.155 17 C -0.040 4.040 18 C -0.069 4.069 19 O -0.248 6.248 20 H 0.289 0.711 21 H 0.418 0.582 22 H 0.147 0.853 23 H 0.184 0.816 24 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -7.443 -0.055 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.178 1.178 5 H -0.170 1.170 6 H -0.185 1.185 7 C -0.469 4.469 8 H 0.101 0.899 9 N -0.148 5.148 10 C 0.176 3.824 11 N -0.358 5.358 12 C -0.025 4.025 13 C -0.176 4.176 14 C 0.097 3.903 15 F -0.112 7.112 16 C -0.176 4.176 17 C -0.059 4.059 18 C -0.120 4.120 19 O -0.141 6.141 20 H 0.099 0.901 21 H 0.260 0.740 22 H 0.165 0.835 23 H 0.201 0.799 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.464 -6.803 -0.051 11.656 hybrid contribution -0.393 0.650 -0.006 0.760 sum 9.071 -6.153 -0.057 10.961 Atomic orbital electron populations 1.69760 1.07379 1.30135 1.46684 1.25772 0.96385 1.02055 0.95176 0.85531 0.79279 0.77779 0.80380 1.17782 1.16983 1.18522 1.19119 0.78650 0.96636 1.52467 0.89861 1.39750 1.05662 1.00878 1.68536 1.21483 0.84717 0.81424 0.94780 1.70938 1.07547 1.17647 1.39635 1.19618 0.94363 0.88853 0.99636 1.19935 0.96410 0.92332 1.08960 1.17214 0.81867 0.88740 1.02505 1.91495 1.45996 1.79751 1.93980 1.21002 0.88318 1.02029 1.06203 1.19942 1.00491 0.86504 0.98948 1.20628 0.86102 0.92753 1.12470 1.84439 1.35934 1.14737 1.79029 0.90120 0.74023 0.83515 0.79902 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.00 13.96 21.65 0.30 -48.70 14 2 C 0.01 0.51 5.50 84.87 0.47 0.98 14 3 Si 0.95 36.86 27.74 68.60 1.90 38.77 14 4 H -0.25 -9.45 7.11 99.48 0.71 -8.74 14 5 H -0.25 -8.78 6.51 99.48 0.65 -8.14 14 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 14 7 C -0.34 -18.04 10.29 84.03 0.86 -17.17 14 8 H 0.08 4.94 7.62 -2.91 -0.02 4.92 14 9 N -0.52 -24.54 5.20 -305.35 -1.59 -26.12 14 10 C 0.48 22.66 8.82 179.30 1.58 24.24 14 11 N -0.61 -27.55 11.38 -306.37 -3.49 -31.03 14 12 C 0.09 3.68 7.23 39.37 0.28 3.97 14 13 C -0.15 -5.01 10.07 22.54 0.23 -4.79 14 14 C 0.12 3.20 7.28 22.35 0.16 3.37 14 15 F -0.13 -3.38 17.26 44.97 0.78 -2.60 14 16 C -0.16 -3.68 10.01 22.37 0.22 -3.46 14 17 C -0.04 -1.15 10.05 22.29 0.22 -0.92 14 18 C -0.07 -2.71 7.42 22.86 0.17 -2.54 14 19 O -0.25 -11.65 10.12 -14.67 -0.15 -11.80 14 20 H 0.29 14.27 8.31 -92.71 -0.77 13.50 14 21 H 0.42 17.89 5.87 -92.71 -0.54 17.35 14 22 H 0.15 4.33 8.06 -2.91 -0.02 4.31 14 23 H 0.18 2.80 8.06 -2.91 -0.02 2.78 14 24 H 0.16 3.70 8.06 -2.91 -0.02 3.68 14 Total: -1.00 -59.86 229.03 2.62 -57.24 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.65 Total: 20.57 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.21 Total: 3.67 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -4.77 Total: -105.86 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.15 Total: -11.80 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 1.90 Total: 38.77 kcal Total: -59.86 2.62 -57.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602801.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.703 kcal (2) G-P(sol) polarization free energy of solvation -59.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds