Wall clock time and date at job start Mon Mar 30 2020 03:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86806 * 119.99329 * 2 1 4 4 H 1.48499 * 109.46985 * 270.27241 * 3 2 1 5 5 H 1.48495 * 109.47013 * 30.27597 * 3 2 1 6 6 H 1.48497 * 109.46788 * 150.27485 * 3 2 1 7 7 C 1.40309 * 120.00525 * 180.27484 * 2 1 3 8 8 H 1.07998 * 120.00022 * 179.72342 * 7 2 1 9 9 C 1.40070 * 119.99668 * 359.72957 * 7 2 1 10 10 C 1.35036 * 119.99980 * 175.28227 * 9 7 2 11 11 C 1.50709 * 119.99787 * 6.20968 * 10 9 7 12 12 C 1.50702 * 109.46451 * 126.08924 * 11 10 9 13 13 C 1.38230 * 120.00708 * 264.72094 * 12 11 10 14 14 C 1.38222 * 120.01161 * 179.77252 * 13 12 11 15 15 C 1.38267 * 120.02489 * 0.51129 * 14 13 12 16 16 C 1.38189 * 120.01401 * 359.74743 * 15 14 13 17 17 C 1.38325 * 120.00246 * 85.00787 * 12 11 10 18 18 Cl 1.73606 * 120.01909 * 359.94503 * 17 12 11 19 19 H 0.96991 * 120.00297 * 359.72778 * 1 2 3 20 20 H 1.07999 * 120.00274 * 355.27334 * 9 7 2 21 21 H 1.07998 * 120.00271 * 186.22102 * 10 9 7 22 22 H 1.08997 * 109.47023 * 246.09411 * 11 10 9 23 23 H 1.09001 * 109.46994 * 6.09625 * 11 10 9 24 24 H 1.07999 * 119.99683 * 0.02562 * 13 12 11 25 25 H 1.08002 * 119.98798 * 180.27413 * 14 13 12 26 26 H 1.08003 * 119.98904 * 179.76594 * 15 14 13 27 27 H 1.08002 * 120.00797 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4824 2.0499 -1.4001 5 1 1.4410 2.6510 0.7059 6 1 3.5412 1.4387 0.6942 7 6 2.0086 -1.2150 -0.0058 8 1 3.0885 -1.2149 -0.0103 9 6 1.3083 -2.4281 -0.0059 10 6 1.9797 -3.5953 -0.1077 11 6 3.4865 -3.6027 -0.0802 12 6 3.9646 -4.5500 0.9899 13 6 4.2782 -4.0705 2.2478 14 6 4.7122 -4.9401 3.2307 15 6 4.8430 -6.2883 2.9532 16 6 4.5349 -6.7680 1.6944 17 6 4.0953 -5.8987 0.7116 18 17 3.7073 -6.5008 -0.8698 19 1 -0.4850 0.8399 0.0040 20 1 0.2314 -2.4300 0.0755 21 1 1.4369 -4.5235 -0.2090 22 1 3.8659 -3.9273 -1.0490 23 1 3.8509 -2.5981 0.1347 24 1 4.1803 -3.0169 2.4640 25 1 4.9530 -4.5657 4.2148 26 1 5.1858 -6.9666 3.7206 27 1 4.6375 -7.8210 1.4777 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260611510.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:46 Heat of formation + Delta-G solvation = 10.673686 kcal Electronic energy + Delta-G solvation = -12183.425182 eV Core-core repulsion = 9931.410665 eV Total energy + Delta-G solvation = -2252.014517 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.91662 -35.90130 -34.73932 -32.81401 -30.37795 -30.18884 -26.35891 -24.15858 -22.22197 -20.99788 -18.69666 -16.76519 -16.07838 -15.16017 -14.84332 -14.73984 -13.48221 -13.27599 -13.19283 -12.61197 -12.46717 -11.51976 -11.43024 -11.29260 -11.08199 -10.93440 -10.72079 -10.33384 -10.19151 -9.77204 -9.45756 -9.09691 -8.42847 -8.02018 -7.57211 -6.72163 -4.22873 1.59373 1.74886 2.67282 2.96834 3.09902 3.14157 3.89495 3.99398 4.12532 5.17325 5.24109 5.37960 5.50249 5.75954 5.85062 6.09908 6.36956 6.50142 6.64399 6.80704 6.84753 7.11160 7.17460 7.23794 7.33661 7.63733 7.88012 8.43152 8.71100 9.14692 9.29190 10.31680 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.007202 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.028113 B = 3887.112982 C = 4339.571884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.053 3.947 10 C -0.410 4.410 11 C -0.015 4.015 12 C -0.032 4.032 13 C -0.109 4.109 14 C -0.117 4.117 15 C -0.136 4.136 16 C -0.115 4.115 17 C -0.042 4.042 18 Cl -0.076 7.076 19 H 0.280 0.720 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 -6.981 3.759 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.033 3.967 10 C -0.432 4.432 11 C -0.051 4.051 12 C -0.033 4.033 13 C -0.128 4.128 14 C -0.136 4.136 15 C -0.154 4.154 16 C -0.134 4.134 17 C -0.068 4.068 18 Cl -0.048 7.048 19 H 0.090 0.910 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.092 0.908 24 H 0.148 0.852 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.660 -6.866 3.612 10.903 hybrid contribution 0.138 0.663 -0.047 0.678 sum 7.798 -6.204 3.565 10.583 Atomic orbital electron populations 1.69572 1.07701 1.29338 1.38335 1.26122 0.94751 1.01654 0.91798 0.86321 0.80419 0.80769 0.79198 1.19462 1.20377 1.18567 1.19706 0.94749 0.90715 1.44258 0.90581 1.19872 0.96532 0.92057 0.88245 1.21656 0.91233 0.96067 1.34237 1.19269 0.96668 0.96135 0.93046 1.20439 0.93059 0.92934 0.96884 1.21116 0.99033 1.00442 0.92162 1.21180 0.99701 0.93538 0.99136 1.20885 1.02754 0.95715 0.96085 1.20925 1.00639 0.99050 0.92801 1.20836 1.05016 0.93915 0.87079 1.98328 1.92909 1.87743 1.25772 0.90987 0.90275 0.91472 0.93615 0.90765 0.85197 0.86192 0.86096 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.00 12.87 55.57 0.72 -21.28 15 2 C 0.07 1.88 5.50 -17.26 -0.09 1.78 15 3 Si 0.91 19.13 29.56 -169.99 -5.03 14.11 15 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.46 -12.44 8.64 -38.12 -0.33 -12.76 15 8 H 0.08 1.96 5.51 -52.49 -0.29 1.68 15 9 C 0.05 1.45 9.38 -40.03 -0.38 1.07 15 10 C -0.41 -10.29 9.66 -35.44 -0.34 -10.63 15 11 C -0.01 -0.32 5.10 -29.03 -0.15 -0.47 15 12 C -0.03 -0.63 5.12 -104.59 -0.54 -1.17 15 13 C -0.11 -1.94 9.68 -39.59 -0.38 -2.32 15 14 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 15 15 C -0.14 -1.89 10.05 -39.59 -0.40 -2.29 15 16 C -0.12 -1.76 9.83 -39.55 -0.39 -2.14 15 17 C -0.04 -0.75 6.31 -39.50 -0.25 -1.00 15 18 Cl -0.08 -1.33 27.40 -51.86 -1.42 -2.75 15 19 H 0.28 6.81 8.29 -40.82 -0.34 6.47 15 20 H 0.08 2.27 7.43 -52.49 -0.39 1.88 15 21 H 0.07 1.70 8.06 -52.49 -0.42 1.28 15 22 H 0.05 0.99 7.13 -51.93 -0.37 0.62 15 23 H 0.07 1.68 5.29 -51.93 -0.27 1.41 15 24 H 0.13 2.27 8.06 -52.49 -0.42 1.84 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.12 1.30 8.06 -52.48 -0.42 0.87 15 27 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 LS Contribution 254.40 15.07 3.83 3.83 Total: -1.00 -27.39 254.40 -8.11 -35.50 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -2.57 Total: 2.66 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -3.64 Total: -32.08 kcal Atomic # 7 Polarization: -22.00 SS G_CDS: 0.72 Total: -21.28 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.42 Total: -2.75 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.39 -8.11 -35.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260611510.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.176 kcal (2) G-P(sol) polarization free energy of solvation -27.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds