Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86806 * 119.99329 * 2 1 4 4 H 1.48499 * 109.46985 * 270.27241 * 3 2 1 5 5 H 1.48495 * 109.47013 * 30.27597 * 3 2 1 6 6 H 1.48497 * 109.46788 * 150.27485 * 3 2 1 7 7 C 1.40309 * 120.00525 * 180.27484 * 2 1 3 8 8 H 1.07998 * 120.00022 * 179.72342 * 7 2 1 9 9 C 1.40070 * 119.99668 * 359.72957 * 7 2 1 10 10 C 1.35036 * 119.99980 * 175.28227 * 9 7 2 11 11 C 1.50709 * 119.99787 * 6.20968 * 10 9 7 12 12 C 1.50702 * 109.46451 * 126.08924 * 11 10 9 13 13 C 1.38230 * 120.00708 * 264.72094 * 12 11 10 14 14 C 1.38222 * 120.01161 * 179.77252 * 13 12 11 15 15 C 1.38267 * 120.02489 * 0.51129 * 14 13 12 16 16 C 1.38189 * 120.01401 * 359.74743 * 15 14 13 17 17 C 1.38325 * 120.00246 * 85.00787 * 12 11 10 18 18 Cl 1.73606 * 120.01909 * 359.94503 * 17 12 11 19 19 H 0.96991 * 120.00297 * 359.72778 * 1 2 3 20 20 H 1.07999 * 120.00274 * 355.27334 * 9 7 2 21 21 H 1.07998 * 120.00271 * 186.22102 * 10 9 7 22 22 H 1.08997 * 109.47023 * 246.09411 * 11 10 9 23 23 H 1.09001 * 109.46994 * 6.09625 * 11 10 9 24 24 H 1.07999 * 119.99683 * 0.02562 * 13 12 11 25 25 H 1.08002 * 119.98798 * 180.27413 * 14 13 12 26 26 H 1.08003 * 119.98904 * 179.76594 * 15 14 13 27 27 H 1.08002 * 120.00797 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4824 2.0499 -1.4001 5 1 1.4410 2.6510 0.7059 6 1 3.5412 1.4387 0.6942 7 6 2.0086 -1.2150 -0.0058 8 1 3.0885 -1.2149 -0.0103 9 6 1.3083 -2.4281 -0.0059 10 6 1.9797 -3.5953 -0.1077 11 6 3.4865 -3.6027 -0.0802 12 6 3.9646 -4.5500 0.9899 13 6 4.2782 -4.0705 2.2478 14 6 4.7122 -4.9401 3.2307 15 6 4.8430 -6.2883 2.9532 16 6 4.5349 -6.7680 1.6944 17 6 4.0953 -5.8987 0.7116 18 17 3.7073 -6.5008 -0.8698 19 1 -0.4850 0.8399 0.0040 20 1 0.2314 -2.4300 0.0755 21 1 1.4369 -4.5235 -0.2090 22 1 3.8659 -3.9273 -1.0490 23 1 3.8509 -2.5981 0.1347 24 1 4.1803 -3.0169 2.4640 25 1 4.9530 -4.5657 4.2148 26 1 5.1858 -6.9666 3.7206 27 1 4.6375 -7.8210 1.4777 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260611510.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = -2.485120 kcal Electronic energy + Delta-G solvation = -12183.995791 eV Core-core repulsion = 9931.410665 eV Total energy + Delta-G solvation = -2252.585126 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22231 -37.24162 -36.66126 -34.58739 -31.98150 -31.52436 -28.11716 -26.03457 -23.48872 -22.39769 -20.67863 -18.45816 -17.63523 -16.71388 -16.38578 -16.14287 -15.18944 -14.82519 -14.58957 -14.23329 -13.88786 -13.35955 -13.05549 -12.87044 -12.49516 -12.31710 -12.23427 -11.97272 -11.79794 -11.50131 -11.34286 -11.04555 -9.71279 -9.64053 -9.40959 -8.67391 -6.28394 0.32958 0.46772 1.26017 1.34132 1.38171 1.52337 1.97726 2.22339 2.82490 3.40901 3.97334 4.07727 4.22072 4.48612 4.56374 4.72640 4.87173 5.03299 5.09517 5.20932 5.32265 5.39235 5.50199 5.58661 5.76361 5.85873 6.02820 6.38246 6.65635 7.08558 7.21040 8.39131 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.007202 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.028113 B = 3887.112982 C = 4339.571884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.488 4.488 8 H 0.081 0.919 9 C 0.024 3.976 10 C -0.397 4.397 11 C -0.006 4.006 12 C -0.066 4.066 13 C -0.127 4.127 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.058 4.058 18 Cl -0.083 7.083 19 H 0.289 0.711 20 H 0.052 0.948 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.154 0.846 26 H 0.165 0.835 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.770 -7.375 5.286 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.518 4.518 8 H 0.099 0.901 9 C 0.004 3.996 10 C -0.419 4.419 11 C -0.043 4.043 12 C -0.066 4.066 13 C -0.145 4.145 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.133 4.133 17 C -0.084 4.084 18 Cl -0.054 7.054 19 H 0.099 0.901 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.140 0.860 25 H 0.172 0.828 26 H 0.183 0.817 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.512 -7.281 5.138 13.034 hybrid contribution -0.447 0.623 -0.471 0.900 sum 9.065 -6.658 4.667 12.177 Atomic orbital electron populations 1.69647 1.09353 1.30918 1.38758 1.27072 0.95581 1.05303 0.90690 0.85161 0.79096 0.75658 0.79555 1.18730 1.19185 1.17750 1.19893 0.95086 0.91291 1.45562 0.90069 1.19882 0.95373 0.93577 0.90738 1.21816 0.93270 0.94828 1.31989 1.19058 0.94294 0.96583 0.94344 1.20215 0.96149 0.93308 0.96966 1.21213 1.00020 1.00874 0.92383 1.21556 0.97995 0.93666 0.99680 1.21419 1.00220 0.95898 0.96272 1.21311 0.99398 1.00006 0.92602 1.21035 1.05932 0.93792 0.87676 1.98320 1.93057 1.87619 1.26385 0.90109 0.93007 0.92355 0.93717 0.91901 0.85989 0.82836 0.81743 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.00 12.87 21.89 0.28 -46.72 15 2 C 0.03 1.37 5.50 85.37 0.47 1.83 15 3 Si 0.98 39.10 29.56 68.60 2.03 41.12 15 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 15 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 15 7 C -0.49 -26.97 8.64 23.22 0.20 -26.77 15 8 H 0.08 4.30 5.51 -2.91 -0.02 4.28 15 9 C 0.02 1.40 9.38 21.98 0.21 1.60 15 10 C -0.40 -20.72 9.66 24.95 0.24 -20.48 15 11 C -0.01 -0.27 5.10 29.11 0.15 -0.12 15 12 C -0.07 -2.56 5.12 -19.84 -0.10 -2.67 15 13 C -0.13 -4.37 9.68 22.26 0.22 -4.15 15 14 C -0.11 -2.91 10.05 22.27 0.22 -2.68 15 15 C -0.12 -2.79 10.05 22.26 0.22 -2.57 15 16 C -0.11 -3.12 9.83 22.29 0.22 -2.90 15 17 C -0.06 -2.02 6.31 22.32 0.14 -1.88 15 18 Cl -0.08 -2.85 27.40 -2.72 -0.07 -2.93 15 19 H 0.29 14.22 8.29 -92.72 -0.77 13.45 15 20 H 0.05 3.16 7.43 -2.91 -0.02 3.14 15 21 H 0.06 3.08 8.06 -2.91 -0.02 3.05 15 22 H 0.04 1.99 7.13 -2.39 -0.02 1.98 15 23 H 0.06 2.95 5.29 -2.39 -0.01 2.93 15 24 H 0.12 4.28 8.06 -2.91 -0.02 4.25 15 25 H 0.15 2.96 8.06 -2.91 -0.02 2.94 15 26 H 0.17 2.46 8.06 -2.91 -0.02 2.43 15 27 H 0.15 3.23 8.06 -2.91 -0.02 3.21 15 Total: -1.00 -60.93 254.40 5.59 -55.34 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.17 Total: 13.96 kcal Atomic # 6 Polarization: -62.97 SS G_CDS: 2.19 Total: -60.78 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.28 Total: -46.72 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.07 Total: -2.93 kcal Total: -60.93 5.59 -55.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260611510.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.856 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds