Wall clock time and date at job start Mon Mar 30 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00158 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00006 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00041 * 3 2 1 7 7 C 1.38798 * 119.99859 * 180.27882 * 2 1 3 8 8 H 1.08001 * 119.99840 * 359.71839 * 7 2 1 9 9 N 1.36963 * 119.99710 * 179.72486 * 7 2 1 10 10 C 1.37629 * 119.99689 * 180.02562 * 9 7 2 11 11 N 1.30904 * 124.96833 * 359.69160 * 10 9 7 12 12 C 1.35992 * 108.71771 * 179.89915 * 11 10 9 13 13 C 1.39654 * 133.63163 * 180.10029 * 12 11 10 14 14 C 1.37709 * 119.75669 * 180.29983 * 13 12 11 15 15 C 1.38892 * 120.38088 * 0.02562 * 14 13 12 16 16 F 1.35104 * 119.78754 * 179.97438 * 15 14 13 17 17 C 1.38214 * 120.42726 * 359.96855 * 15 14 13 18 18 C 1.38543 * 119.88387 * 0.02861 * 17 15 14 19 19 O 1.34543 * 124.96625 * 180.02562 * 10 9 7 20 20 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99937 * 359.97438 * 9 7 2 22 22 H 1.08002 * 120.12346 * 0.28596 * 13 12 11 23 23 H 1.08002 * 119.81188 * 179.97438 * 14 13 12 24 24 H 1.08001 * 120.05410 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0464 1.4001 5 1 3.5470 1.4402 -0.7000 6 1 1.4470 2.6527 -0.7000 7 6 2.0095 -1.2020 -0.0058 8 1 1.4694 -2.1373 -0.0058 9 7 3.3791 -1.2020 -0.0115 10 6 4.0672 -2.3939 -0.0179 11 7 3.5133 -3.5800 -0.0133 12 6 4.4956 -4.5204 -0.0244 13 6 4.4927 -5.9169 -0.0275 14 6 5.6868 -6.6028 -0.0337 15 6 6.8927 -5.9138 -0.0365 16 9 8.0572 -6.5988 -0.0421 17 6 6.9092 -4.5317 -0.0336 18 6 5.7164 -3.8272 -0.0273 19 8 5.4076 -2.5104 -0.0233 20 1 -0.4850 0.8400 0.0004 21 1 3.8641 -0.3619 -0.0119 22 1 3.5575 -6.4570 -0.0247 23 1 5.6856 -7.6829 -0.0357 24 1 7.8504 -4.0020 -0.0361 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260621294.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:38 Heat of formation + Delta-G solvation = 5.242787 kcal Electronic energy + Delta-G solvation = -14041.746169 eV Core-core repulsion = 11257.619431 eV Total energy + Delta-G solvation = -2784.126737 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.53090 -42.28733 -37.31672 -35.92665 -33.43956 -32.20941 -30.30823 -28.05682 -25.22328 -22.73390 -22.00802 -20.86067 -19.11543 -17.66119 -17.29778 -16.34314 -16.14489 -15.53740 -15.12601 -14.88706 -14.34083 -13.65755 -13.38793 -12.78854 -12.59406 -12.32684 -12.11519 -11.64898 -11.17350 -10.99130 -10.84598 -10.36661 -9.94513 -9.31399 -8.92325 -8.46763 -7.19360 -6.70915 -4.10651 1.25561 1.60516 2.69951 2.82772 2.88232 2.97653 3.21851 3.78140 4.13746 4.16343 4.73025 4.84668 5.03628 5.20711 5.47804 5.50679 5.88926 6.18534 6.40181 6.48740 6.65757 6.78816 7.07917 7.16526 7.68278 8.16815 8.43480 8.85707 9.08796 10.38471 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.069836 B = 0.006461 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.841876 B = 4332.485797 C = 4723.484016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.049 3.951 3 Si 0.879 3.121 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.293 4.293 8 H 0.136 0.864 9 N -0.509 5.509 10 C 0.459 3.541 11 N -0.559 5.559 12 C 0.097 3.903 13 C -0.090 4.090 14 C -0.131 4.131 15 C 0.054 3.946 16 F -0.145 7.145 17 C -0.108 4.108 18 C -0.011 4.011 19 O -0.253 6.253 20 H 0.283 0.717 21 H 0.394 0.606 22 H 0.136 0.864 23 H 0.135 0.865 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.584 -4.808 -0.034 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.158 4.158 3 Si 0.704 3.296 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.421 4.421 8 H 0.153 0.847 9 N -0.135 5.135 10 C 0.160 3.840 11 N -0.304 5.304 12 C -0.022 4.022 13 C -0.112 4.112 14 C -0.151 4.151 15 C 0.032 3.968 16 F -0.124 7.124 17 C -0.128 4.128 18 C -0.063 4.063 19 O -0.148 6.148 20 H 0.094 0.906 21 H 0.230 0.770 22 H 0.154 0.846 23 H 0.153 0.847 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.528 -4.620 -0.023 9.699 hybrid contribution 1.491 1.480 -0.027 2.101 sum 10.019 -3.140 -0.050 10.499 Atomic orbital electron populations 1.69637 1.05459 1.28566 1.45296 1.24970 0.95657 0.98250 0.96926 0.86642 0.79923 0.83462 0.79598 1.18872 1.19173 1.19224 1.19531 0.76309 0.97846 1.48388 0.84672 1.39948 1.06378 1.00438 1.66709 1.21299 0.75996 0.89317 0.97366 1.71167 1.27557 0.95120 1.36593 1.19983 0.88523 0.94964 0.98772 1.19841 0.97886 0.90011 1.03498 1.20738 0.90454 1.00159 1.03760 1.16731 0.81331 0.88408 1.10326 1.91439 1.46785 1.79385 1.94806 1.19259 0.95492 0.91540 1.06552 1.19325 0.96343 0.81047 1.09569 1.84298 1.24814 1.25501 1.80175 0.90648 0.76963 0.84649 0.84709 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.60 13.96 55.49 0.77 -21.83 14 2 C 0.05 1.23 5.50 -17.46 -0.10 1.13 14 3 Si 0.88 17.70 27.74 -169.99 -4.72 12.99 14 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 5 H -0.27 -5.01 6.51 56.52 0.37 -4.64 14 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 7 C -0.29 -7.52 10.26 -15.05 -0.15 -7.67 14 8 H 0.14 3.88 7.56 -52.49 -0.40 3.48 14 9 N -0.51 -11.68 5.20 -12.90 -0.07 -11.74 14 10 C 0.46 10.59 8.91 -87.63 -0.78 9.81 14 11 N -0.56 -13.31 10.56 -12.09 -0.13 -13.43 14 12 C 0.10 2.00 7.23 -84.69 -0.61 1.38 14 13 C -0.09 -1.52 10.10 -39.25 -0.40 -1.91 14 14 C -0.13 -1.91 10.00 -39.53 -0.40 -2.31 14 15 C 0.05 0.83 7.29 -39.35 -0.29 0.54 14 16 F -0.15 -2.15 17.26 2.25 0.04 -2.11 14 17 C -0.11 -1.79 10.03 -39.48 -0.40 -2.19 14 18 C -0.01 -0.21 7.42 -38.66 -0.29 -0.50 14 19 O -0.25 -5.35 10.79 2.36 0.03 -5.33 14 20 H 0.28 6.86 8.31 -40.82 -0.34 6.52 14 21 H 0.39 8.04 5.87 -40.82 -0.24 7.80 14 22 H 0.14 2.02 8.06 -52.49 -0.42 1.60 14 23 H 0.14 1.54 8.06 -52.49 -0.42 1.11 14 24 H 0.13 1.87 8.06 -52.49 -0.42 1.45 14 LS Contribution 228.88 15.07 3.45 3.45 Total: -1.00 -27.08 228.88 -5.10 -32.18 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.07 Total: 7.52 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.40 Total: -1.70 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.58 Total: -47.00 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: 0.03 Total: -5.33 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.72 Total: 12.99 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.08 -5.10 -32.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260621294.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.426 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds