Wall clock time and date at job start Mon Mar 30 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.09000 * 108.89619 * 56.32844 * 10 9 7 12 12 C 1.54207 * 108.92689 * 297.78872 * 10 9 7 13 13 S 1.83820 * 102.86359 * 214.21631 * 12 10 9 14 14 O 1.42101 * 109.80973 * 282.31137 * 13 12 10 15 15 O 1.42103 * 109.81092 * 147.96453 * 13 12 10 16 16 C 1.83816 * 94.23832 * 35.14040 * 13 12 10 17 17 C 1.52379 * 108.92396 * 175.00176 * 10 9 7 18 18 H 1.09000 * 108.93080 * 0.13147 * 17 10 9 19 19 F 1.39900 * 108.92512 * 241.48512 * 17 10 9 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09007 * 110.73478 * 332.55724 * 12 10 9 24 24 H 1.08999 * 110.73545 * 95.86882 * 12 10 9 25 25 H 1.08999 * 110.73973 * 206.51998 * 16 13 12 26 26 H 1.09004 * 110.89206 * 83.27361 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9094 -3.5588 0.8577 12 6 3.0873 -3.6003 -1.2910 13 16 3.3738 -5.3743 -1.6780 14 8 4.3927 -5.8928 -0.8341 15 8 3.4496 -5.5540 -3.0856 16 6 1.7256 -5.9141 -1.0690 17 6 1.4752 -4.9708 0.1251 18 1 0.4092 -4.7499 0.1810 19 9 1.8663 -5.6163 1.3030 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.5299 -3.1155 -2.0926 24 1 4.0319 -3.0870 -1.1113 25 1 1.7569 -6.9529 -0.7402 26 1 0.9635 -5.7763 -1.8361 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260719928.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:50 Heat of formation + Delta-G solvation = -154.117359 kcal Electronic energy + Delta-G solvation = -13689.688444 eV Core-core repulsion = 11001.802532 eV Total energy + Delta-G solvation = -2687.885912 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.78188 -38.21100 -37.71346 -37.04710 -34.65131 -31.57842 -29.10003 -26.75660 -24.03550 -21.43311 -19.94172 -18.71732 -17.76140 -17.43330 -17.10179 -16.69155 -16.40325 -16.21390 -15.52014 -14.73284 -14.43068 -13.86723 -13.73636 -13.39529 -13.23359 -13.13373 -13.04045 -12.79835 -12.45402 -12.25500 -12.21102 -11.62099 -11.40000 -11.15415 -10.92497 -10.54796 -8.20098 -6.28061 -0.91359 1.40406 1.43634 1.48421 1.53723 2.40796 2.54224 2.94908 3.15619 3.16422 3.43752 3.67006 3.83054 4.04961 4.24463 4.47032 4.67593 4.93599 4.96978 5.09038 5.46593 5.62419 5.81028 6.22463 6.86758 7.40930 8.91489 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.039987 B = 0.008734 C = 0.007930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.066617 B = 3204.964984 C = 3530.023139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.034 3.966 10 C -0.111 4.111 11 H 0.089 0.911 12 C -0.540 4.540 13 S 2.391 3.609 14 O -0.965 6.965 15 O -0.966 6.966 16 C -0.589 4.589 17 C 0.095 3.905 18 H 0.120 0.880 19 F -0.215 7.215 20 H 0.263 0.737 21 H 0.021 0.979 22 H 0.003 0.997 23 H 0.148 0.852 24 H 0.141 0.859 25 H 0.167 0.833 26 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -9.273 -2.737 9.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.571 4.571 8 H 0.083 0.917 9 C -0.003 4.003 10 C -0.131 4.131 11 H 0.107 0.893 12 C -0.671 4.671 13 S 2.578 3.422 14 O -0.963 6.963 15 O -0.963 6.963 16 C -0.720 4.720 17 C 0.058 3.942 18 H 0.138 0.862 19 F -0.196 7.196 20 H 0.072 0.928 21 H 0.039 0.961 22 H 0.021 0.979 23 H 0.166 0.834 24 H 0.159 0.841 25 H 0.185 0.815 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.095 -9.714 -3.130 10.664 hybrid contribution -0.464 1.532 0.622 1.717 sum 2.631 -8.182 -2.508 8.953 Atomic orbital electron populations 1.70052 1.07476 1.27624 1.51876 1.25808 0.95620 1.02815 0.95105 0.85565 0.79273 0.79714 0.77515 1.18735 1.20624 1.21002 1.21663 0.93761 0.91803 1.49918 0.91703 1.19186 0.93288 0.91179 0.96689 1.21931 0.98468 0.94997 0.97750 0.89260 1.30287 1.09590 1.21180 1.06000 1.08997 0.78707 0.80208 0.74297 1.93573 1.55318 1.78058 1.69318 1.93553 1.87223 1.85333 1.30182 1.30963 1.22844 1.09767 1.08399 1.21910 1.03265 0.89031 0.80044 0.86231 1.92850 1.93081 1.83148 1.50524 0.92836 0.96077 0.97858 0.83409 0.84056 0.81495 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.54 13.29 21.45 0.28 -52.26 15 2 C 0.00 0.25 5.46 84.65 0.46 0.71 15 3 Si 0.95 41.86 29.54 68.60 2.03 43.89 15 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 7 C -0.53 -27.08 8.54 25.60 0.22 -26.87 15 8 H 0.06 3.16 7.49 -2.91 -0.02 3.13 15 9 C 0.03 1.53 3.93 29.85 0.12 1.65 15 10 C -0.11 -3.80 2.50 -10.59 -0.03 -3.83 15 11 H 0.09 3.22 7.91 -2.39 -0.02 3.20 15 12 C -0.54 -15.80 6.04 72.39 0.44 -15.37 15 13 S 2.39 62.32 6.08 -56.49 -0.34 61.98 15 14 O -0.97 -31.83 18.17 -127.53 -2.32 -34.14 15 15 O -0.97 -29.68 18.17 -127.53 -2.32 -31.99 15 16 C -0.59 -11.91 7.16 72.39 0.52 -11.39 15 17 C 0.09 2.65 4.00 30.80 0.12 2.77 15 18 H 0.12 3.14 7.52 -2.39 -0.02 3.13 15 19 F -0.22 -6.78 16.87 44.97 0.76 -6.02 15 20 H 0.26 14.10 8.31 -92.71 -0.77 13.33 15 21 H 0.02 0.95 8.09 -2.39 -0.02 0.94 15 22 H 0.00 0.15 8.14 -2.39 -0.02 0.13 15 23 H 0.15 4.23 7.82 -2.38 -0.02 4.21 15 24 H 0.14 3.96 8.12 -2.39 -0.02 3.94 15 25 H 0.17 2.66 8.09 -2.39 -0.02 2.64 15 26 H 0.18 2.58 8.14 -2.38 -0.02 2.56 15 Total: -1.00 -68.26 240.70 1.12 -67.14 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.18 Total: 3.73 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 1.85 Total: -52.32 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.28 Total: -52.26 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -4.63 Total: -66.14 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.76 Total: -6.02 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 62.32 SS G_CDS: -0.34 Total: 61.98 kcal Total: -68.26 1.12 -67.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719928.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.977 kcal (2) G-P(sol) polarization free energy of solvation -68.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds