Wall clock time and date at job start Mon Mar 30 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31424 * 119.95198 * 2 1 4 4 C 1.33433 * 120.31510 * 180.02562 * 3 2 1 5 5 C 1.41600 * 119.45623 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99920 * 179.97438 * 5 4 3 7 7 C 1.40059 * 119.99845 * 0.02562 * 5 4 3 8 8 N 1.30693 * 120.00345 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00165 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47143 * 59.99727 * 9 7 5 11 11 H 1.48495 * 109.47608 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47202 * 300.00067 * 9 7 5 13 13 N 1.32951 * 121.08932 * 359.95360 * 4 3 2 14 14 C 1.33211 * 121.59027 * 0.06123 * 13 4 3 15 15 C 1.38070 * 118.64569 * 359.94750 * 14 13 4 16 16 C 1.52097 * 115.60430 * 180.02562 * 15 14 13 17 17 S 1.83250 * 103.53374 * 342.53502 * 16 15 14 18 18 C 1.52137 * 125.77388 * 179.97438 * 14 13 4 19 19 H 1.08994 * 109.46653 * 89.99916 * 1 2 3 20 20 H 1.08998 * 109.46689 * 209.99601 * 1 2 3 21 21 H 1.08998 * 109.46883 * 329.99944 * 1 2 3 22 22 H 0.96996 * 120.00627 * 180.02562 * 8 7 5 23 23 H 1.09001 * 110.60631 * 101.04672 * 16 15 14 24 24 H 1.09004 * 110.61245 * 224.01741 * 16 15 14 25 25 H 1.08997 * 110.61447 * 315.97836 * 18 14 13 26 26 H 1.09006 * 110.61088 * 78.96426 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1632 1.1387 0.0000 4 6 3.4975 1.1472 -0.0005 5 6 4.1860 2.3845 -0.0011 6 1 5.2659 2.4016 -0.0011 7 6 3.4666 3.5862 -0.0005 8 7 2.1598 3.5656 0.0000 9 14 4.3748 5.2186 -0.0005 10 1 5.2267 5.3110 -1.2133 11 1 3.3921 6.3319 -0.0005 12 1 5.2276 5.3105 1.2117 13 7 4.1912 0.0130 -0.0001 14 6 3.5874 -1.1744 -0.0004 15 6 2.2073 -1.2150 0.0000 16 6 1.5907 -2.6054 0.0002 17 16 2.9702 -3.6864 -0.5348 18 6 4.2844 -2.5267 -0.0005 19 1 -0.3632 0.0000 -1.0276 20 1 -0.3632 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6615 4.3978 0.0000 23 1 1.2567 -2.8768 1.0017 24 1 0.7642 -2.6588 -0.7085 25 1 5.1124 -2.5315 -0.7094 26 1 4.6337 -2.7784 1.0009 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260826007.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:36 Heat of formation + Delta-G solvation = 35.990480 kcal Electronic energy + Delta-G solvation = -12742.749154 eV Core-core repulsion = 10526.168913 eV Total energy + Delta-G solvation = -2216.580241 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.35286 -34.54589 -33.25273 -32.57611 -28.42050 -28.17421 -27.18204 -24.26059 -21.17107 -20.34204 -17.58692 -16.86828 -15.31799 -15.02337 -14.63789 -14.04260 -13.62152 -13.09191 -12.92038 -12.74583 -12.04767 -11.93296 -11.64418 -11.47308 -11.25918 -11.23233 -10.78216 -10.49733 -10.12826 -9.46955 -9.25559 -8.86759 -7.95139 -7.48159 -7.36801 -6.68920 -4.85412 2.28630 2.30411 2.62913 2.76359 2.99132 3.02032 3.04880 3.79737 4.47100 4.95549 5.50120 5.53358 5.55768 5.71815 5.77001 5.90737 5.98790 5.99226 6.30745 6.33265 6.53501 6.78081 6.93466 7.04588 7.43736 8.04545 8.36126 8.44070 8.92689 9.98736 10.13206 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.048715 B = 0.008498 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.630201 B = 3293.928743 C = 3826.016407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.207 3.793 3 N -0.495 5.495 4 C 0.399 3.601 5 C -0.393 4.393 6 H 0.095 0.905 7 C 0.065 3.935 8 N -0.709 5.709 9 Si 0.922 3.078 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.262 1.262 13 N -0.592 5.592 14 C 0.184 3.816 15 C -0.356 4.356 16 C 0.020 3.980 17 S -0.301 6.301 18 C -0.007 4.007 19 H 0.067 0.933 20 H 0.059 0.941 21 H 0.073 0.927 22 H 0.278 0.722 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 -4.117 0.605 4.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 N -0.211 5.211 4 C 0.163 3.837 5 C -0.428 4.428 6 H 0.113 0.887 7 C -0.162 4.162 8 N -0.330 5.330 9 Si 0.745 3.255 10 H -0.186 1.186 11 H -0.200 1.200 12 H -0.186 1.186 13 N -0.313 5.313 14 C 0.032 3.968 15 C -0.367 4.367 16 C -0.129 4.129 17 S -0.075 6.075 18 C -0.156 4.156 19 H 0.086 0.914 20 H 0.078 0.922 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.126 0.874 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.583 -4.109 0.078 4.404 hybrid contribution -0.134 0.950 0.509 1.087 sum -1.717 -3.159 0.587 3.643 Atomic orbital electron populations 1.20585 0.90742 1.02007 1.01860 1.21348 0.96113 0.87676 0.90129 1.69201 1.09441 1.24412 1.18077 1.19792 0.85234 0.90421 0.88259 1.19361 0.94908 0.87333 1.41185 0.88703 1.26130 0.95029 1.01585 0.93458 1.70098 1.06832 1.29127 1.26968 0.86136 0.79838 0.79246 0.80231 1.18625 1.20001 1.18630 1.68172 1.41288 0.96926 1.24956 1.21355 0.90020 0.93000 0.92377 1.20930 0.95128 0.94322 1.26294 1.22246 0.96131 0.92098 1.02453 1.87299 1.05400 1.30948 1.83846 1.22570 0.97666 0.90823 1.04558 0.91444 0.92184 0.90836 0.91054 0.90175 0.89172 0.87439 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.94 36.01 0.36 -1.37 15 2 C 0.21 4.86 6.83 -82.01 -0.56 4.30 15 3 N -0.49 -13.42 7.82 -8.80 -0.07 -13.49 15 4 C 0.40 11.19 7.37 -158.76 -1.17 10.02 15 5 C -0.39 -10.59 9.38 -37.62 -0.35 -10.94 15 6 H 0.09 2.44 7.85 -52.49 -0.41 2.03 15 7 C 0.07 1.61 5.50 -17.35 -0.10 1.52 15 8 N -0.71 -18.07 11.44 55.55 0.64 -17.44 15 9 Si 0.92 18.02 29.56 -169.99 -5.02 12.99 15 10 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 11 H -0.28 -5.18 7.11 56.52 0.40 -4.77 15 12 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 13 N -0.59 -15.78 10.34 -8.52 -0.09 -15.87 15 14 C 0.18 4.29 7.04 -81.34 -0.57 3.72 15 15 C -0.36 -7.86 5.94 -103.24 -0.61 -8.48 15 16 C 0.02 0.35 6.34 36.70 0.23 0.58 15 17 S -0.30 -5.30 23.43 -107.50 -2.52 -7.82 15 18 C -0.01 -0.14 7.38 36.72 0.27 0.13 15 19 H 0.07 1.15 8.14 -51.93 -0.42 0.72 15 20 H 0.06 0.92 7.46 -51.93 -0.39 0.53 15 21 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 22 H 0.28 6.36 8.29 -40.82 -0.34 6.02 15 23 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.09 1.45 8.10 -51.93 -0.42 1.03 15 25 H 0.11 1.90 8.14 -51.93 -0.42 1.47 15 26 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 LS Contribution 242.04 15.07 3.65 3.65 Total: -1.00 -29.29 242.04 -8.39 -37.67 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -2.47 Total: 0.81 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.50 Total: -0.51 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.48 Total: -46.79 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 12.99 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.52 Total: -7.82 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.29 -8.39 -37.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260826007.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.665 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds