Wall clock time and date at job start Mon Mar 30 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31424 * 119.95198 * 2 1 4 4 C 1.33433 * 120.31510 * 180.02562 * 3 2 1 5 5 C 1.41600 * 119.45623 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99920 * 179.97438 * 5 4 3 7 7 C 1.40059 * 119.99845 * 0.02562 * 5 4 3 8 8 N 1.30693 * 120.00345 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00165 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47143 * 59.99727 * 9 7 5 11 11 H 1.48495 * 109.47608 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47202 * 300.00067 * 9 7 5 13 13 N 1.32951 * 121.08932 * 359.95360 * 4 3 2 14 14 C 1.33211 * 121.59027 * 0.06123 * 13 4 3 15 15 C 1.38070 * 118.64569 * 359.94750 * 14 13 4 16 16 C 1.52097 * 115.60430 * 180.02562 * 15 14 13 17 17 S 1.83250 * 103.53374 * 342.53502 * 16 15 14 18 18 C 1.52137 * 125.77388 * 179.97438 * 14 13 4 19 19 H 1.08994 * 109.46653 * 89.99916 * 1 2 3 20 20 H 1.08998 * 109.46689 * 209.99601 * 1 2 3 21 21 H 1.08998 * 109.46883 * 329.99944 * 1 2 3 22 22 H 0.96996 * 120.00627 * 180.02562 * 8 7 5 23 23 H 1.09001 * 110.60631 * 101.04672 * 16 15 14 24 24 H 1.09004 * 110.61245 * 224.01741 * 16 15 14 25 25 H 1.08997 * 110.61447 * 315.97836 * 18 14 13 26 26 H 1.09006 * 110.61088 * 78.96426 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1632 1.1387 0.0000 4 6 3.4975 1.1472 -0.0005 5 6 4.1860 2.3845 -0.0011 6 1 5.2659 2.4016 -0.0011 7 6 3.4666 3.5862 -0.0005 8 7 2.1598 3.5656 0.0000 9 14 4.3748 5.2186 -0.0005 10 1 5.2267 5.3110 -1.2133 11 1 3.3921 6.3319 -0.0005 12 1 5.2276 5.3105 1.2117 13 7 4.1912 0.0130 -0.0001 14 6 3.5874 -1.1744 -0.0004 15 6 2.2073 -1.2150 0.0000 16 6 1.5907 -2.6054 0.0002 17 16 2.9702 -3.6864 -0.5348 18 6 4.2844 -2.5267 -0.0005 19 1 -0.3632 0.0000 -1.0276 20 1 -0.3632 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6615 4.3978 0.0000 23 1 1.2567 -2.8768 1.0017 24 1 0.7642 -2.6588 -0.7085 25 1 5.1124 -2.5315 -0.7094 26 1 4.6337 -2.7784 1.0009 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260826007.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:35 Heat of formation + Delta-G solvation = 18.258620 kcal Electronic energy + Delta-G solvation = -12743.518065 eV Core-core repulsion = 10526.168913 eV Total energy + Delta-G solvation = -2217.349152 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17987 -36.34171 -35.01542 -34.36176 -30.06582 -29.88419 -28.87917 -25.94886 -22.99571 -22.07615 -19.45870 -18.56388 -17.01052 -16.67154 -16.23935 -15.68234 -15.28249 -14.64712 -14.53786 -14.27581 -13.65746 -13.52900 -13.28607 -13.06164 -12.84051 -12.76471 -12.60768 -12.05424 -11.67353 -11.23055 -11.05084 -10.73358 -9.74663 -9.37157 -8.74709 -8.51558 -6.81024 0.52793 0.74593 0.93119 1.22781 1.38819 1.50761 1.52648 2.17574 2.65317 3.30630 3.69340 3.85827 3.97809 4.15310 4.30592 4.40950 4.49751 4.60762 4.74245 4.85425 4.87866 5.08425 5.20705 5.26392 5.69579 6.08735 6.45256 6.55219 7.06753 8.12994 8.30189 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.048715 B = 0.008498 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.630201 B = 3293.928743 C = 3826.016407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.184 3.816 3 N -0.528 5.528 4 C 0.369 3.631 5 C -0.434 4.434 6 H 0.090 0.910 7 C 0.026 3.974 8 N -0.742 5.742 9 Si 1.001 2.999 10 H -0.259 1.259 11 H -0.260 1.260 12 H -0.258 1.258 13 N -0.625 5.625 14 C 0.159 3.841 15 C -0.353 4.353 16 C 0.021 3.979 17 S -0.275 6.275 18 C -0.008 4.008 19 H 0.082 0.918 20 H 0.095 0.905 21 H 0.064 0.936 22 H 0.287 0.713 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 -4.933 0.639 5.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.026 3.974 3 N -0.246 5.246 4 C 0.132 3.868 5 C -0.469 4.469 6 H 0.108 0.892 7 C -0.198 4.198 8 N -0.364 5.364 9 Si 0.820 3.180 10 H -0.183 1.183 11 H -0.184 1.184 12 H -0.182 1.182 13 N -0.347 5.347 14 C 0.010 3.990 15 C -0.363 4.363 16 C -0.127 4.127 17 S -0.049 6.049 18 C -0.156 4.156 19 H 0.101 0.899 20 H 0.114 0.886 21 H 0.083 0.917 22 H 0.098 0.902 23 H 0.122 0.878 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.382 -4.987 0.111 5.527 hybrid contribution 0.051 1.022 0.491 1.135 sum -2.331 -3.965 0.602 4.639 Atomic orbital electron populations 1.20647 0.87211 1.03321 1.03171 1.22231 0.98557 0.87545 0.89056 1.69203 1.09232 1.26441 1.19726 1.20228 0.86235 0.91351 0.89035 1.19680 0.95026 0.88616 1.43571 0.89233 1.27051 0.95804 1.04696 0.92283 1.70155 1.08305 1.30642 1.27307 0.84980 0.78569 0.74263 0.80200 1.18301 1.18357 1.18212 1.68186 1.42077 0.97894 1.26531 1.22177 0.91533 0.93690 0.91640 1.21418 0.95010 0.96196 1.23721 1.22363 0.96600 0.89101 1.04669 1.87247 1.04293 1.29494 1.83890 1.22647 0.98259 0.88711 1.06021 0.89936 0.88642 0.91704 0.90189 0.87753 0.86851 0.86760 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.00 9.94 71.24 0.71 -2.29 15 2 C 0.18 8.58 6.83 43.11 0.29 8.88 15 3 N -0.53 -29.41 7.82 -181.75 -1.42 -30.83 15 4 C 0.37 21.49 7.37 135.32 1.00 22.49 15 5 C -0.43 -24.37 9.38 23.54 0.22 -24.15 15 6 H 0.09 4.86 7.85 -2.91 -0.02 4.84 15 7 C 0.03 1.30 5.50 85.30 0.47 1.76 15 8 N -0.74 -38.70 11.44 21.84 0.25 -38.45 15 9 Si 1.00 37.31 29.56 68.60 2.03 39.34 15 10 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 11 H -0.26 -8.91 7.11 99.48 0.71 -8.21 15 12 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 13 N -0.62 -34.28 10.34 -180.86 -1.87 -36.15 15 14 C 0.16 7.41 7.04 42.77 0.30 7.71 15 15 C -0.35 -15.16 5.94 -18.97 -0.11 -15.27 15 16 C 0.02 0.68 6.34 71.68 0.45 1.14 15 17 S -0.28 -8.85 23.43 -56.49 -1.32 -10.17 15 18 C -0.01 -0.28 7.38 71.70 0.53 0.25 15 19 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 20 H 0.09 2.60 7.46 -2.39 -0.02 2.58 15 21 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 22 H 0.29 13.29 8.29 -92.71 -0.77 12.52 15 23 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 24 H 0.11 3.14 8.10 -2.38 -0.02 3.12 15 25 H 0.11 3.90 8.14 -2.39 -0.02 3.89 15 26 H 0.12 3.78 8.14 -2.38 -0.02 3.77 15 Total: -1.00 -65.48 242.04 2.72 -62.76 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.19 Total: 12.97 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 3.86 Total: 0.52 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.04 Total: -105.43 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.32 Total: -10.17 kcal Total: -65.48 2.72 -62.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260826007.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.020 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds