Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48498 * 109.47705 * 85.01102 * 3 2 1 5 5 H 1.48499 * 109.47067 * 205.01201 * 3 2 1 6 6 H 1.48502 * 109.47137 * 325.00956 * 3 2 1 7 7 C 1.40150 * 120.00088 * 179.71881 * 2 1 3 8 8 H 1.08006 * 119.99662 * 186.54079 * 7 2 1 9 9 C 1.39448 * 119.99771 * 6.54557 * 7 2 1 10 10 O 1.35219 * 125.61993 * 5.99821 * 9 7 2 11 11 C 1.35141 * 110.07031 * 179.85844 * 10 9 7 12 12 C 1.40807 * 108.14083 * 0.40698 * 11 10 9 13 13 C 1.40095 * 119.94411 * 179.77980 * 12 11 10 14 14 C 1.36642 * 119.80837 * 359.97438 * 13 12 11 15 15 C 1.38737 * 120.45263 * 0.02562 * 14 13 12 16 16 C 1.38306 * 120.67536 * 0.02562 * 15 14 13 17 17 F 1.35101 * 120.05485 * 180.02562 * 16 15 14 18 18 C 1.39746 * 125.61413 * 186.30874 * 9 7 2 19 19 O 1.35589 * 126.78903 * 0.02562 * 18 9 7 20 20 H 0.96998 * 119.99664 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.09713 * 179.97438 * 13 12 11 22 22 H 1.08000 * 119.77232 * 180.02562 * 14 13 12 23 23 H 1.08001 * 119.66325 * 180.02562 * 15 14 13 24 24 H 0.96696 * 114.00133 * 89.97836 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3846 2.1074 1.3947 5 1 3.5888 1.4121 -0.5920 6 1 1.4966 2.6199 -0.8029 7 6 2.0093 -1.2137 0.0060 8 1 3.0841 -1.2161 0.1125 9 6 1.3189 -2.4181 -0.1258 10 8 -0.0033 -2.5442 -0.3794 11 6 -0.3401 -3.8512 -0.4464 12 6 0.8200 -4.6152 -0.2160 13 6 0.7492 -6.0144 -0.2254 14 6 -0.4471 -6.6324 -0.4580 15 6 -1.5928 -5.8838 -0.6856 16 6 -1.5448 -4.5015 -0.6816 17 9 -2.6683 -3.7849 -0.9042 18 6 1.8783 -3.6935 -0.0115 19 8 3.1760 -3.9910 0.2452 20 1 -0.4849 0.8401 -0.0004 21 1 1.6375 -6.6028 -0.0494 22 1 -0.5011 -7.7110 -0.4648 23 1 -2.5317 -6.3855 -0.8677 24 1 3.3817 -4.0742 1.1864 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260934775.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -103.681062 kcal Electronic energy + Delta-G solvation = -14545.478124 eV Core-core repulsion = 11724.335343 eV Total energy + Delta-G solvation = -2821.142781 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.82662 -42.71096 -38.40779 -37.76026 -35.83699 -32.19020 -31.18398 -30.55613 -27.32572 -23.64664 -23.28421 -21.96855 -19.99440 -19.16768 -18.07188 -17.38727 -17.18506 -16.87136 -16.40494 -16.03232 -15.82320 -15.29969 -14.66472 -14.39628 -13.83779 -13.49133 -13.21372 -13.11743 -12.72870 -12.69152 -12.37263 -12.07469 -11.48627 -10.95127 -10.45437 -9.55796 -9.06284 -8.94103 -6.70136 0.11152 0.56296 1.17007 1.32984 1.53773 1.73856 2.06540 2.33059 2.80280 2.92348 3.32517 3.82718 4.04681 4.26661 4.47775 4.62246 4.69304 4.81990 5.03883 5.24732 5.33487 5.60916 5.66422 5.71951 6.02187 6.21293 6.30306 6.78370 7.29947 7.94686 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.036668 B = 0.010034 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.423010 B = 2789.845901 C = 3533.616776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.018 3.982 3 Si 1.016 2.984 4 H -0.250 1.250 5 H -0.247 1.247 6 H -0.261 1.261 7 C -0.431 4.431 8 H 0.127 0.873 9 C 0.192 3.808 10 O -0.188 6.188 11 C -0.098 4.098 12 C -0.059 4.059 13 C -0.148 4.148 14 C -0.080 4.080 15 C -0.188 4.188 16 C 0.102 3.898 17 F -0.155 7.155 18 C -0.243 4.243 19 O -0.457 6.457 20 H 0.305 0.695 21 H 0.136 0.864 22 H 0.174 0.826 23 H 0.167 0.833 24 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 -3.785 1.114 3.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.203 4.203 3 Si 0.832 3.168 4 H -0.174 1.174 5 H -0.169 1.169 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.145 0.855 9 C 0.140 3.860 10 O -0.091 6.091 11 C -0.144 4.144 12 C -0.060 4.060 13 C -0.167 4.167 14 C -0.097 4.097 15 C -0.206 4.206 16 C 0.082 3.918 17 F -0.133 7.133 18 C -0.290 4.290 19 O -0.262 6.262 20 H 0.116 0.884 21 H 0.154 0.846 22 H 0.191 0.809 23 H 0.184 0.816 24 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.060 -3.442 0.438 3.470 hybrid contribution -0.075 0.884 0.541 1.039 sum -0.015 -2.558 0.979 2.739 Atomic orbital electron populations 1.69861 1.09863 1.32814 1.28721 1.27558 0.95868 1.06425 0.90468 0.84679 0.78875 0.72878 0.80334 1.17350 1.16946 1.18541 1.19511 0.96547 0.88050 1.41557 0.85538 1.20340 0.79149 0.95558 0.90910 1.84645 1.25592 1.22717 1.76123 1.19964 0.96025 0.84056 1.14401 1.19064 0.92103 0.95298 0.99585 1.20511 0.99771 0.90617 1.05766 1.20827 0.90066 1.01255 0.97585 1.20934 1.02102 0.88278 1.09327 1.17071 0.77916 0.90152 1.06663 1.91390 1.50107 1.79067 1.92779 1.17868 0.86465 0.89395 1.35253 1.84769 1.21167 1.91614 1.28681 0.88421 0.84588 0.80871 0.81574 0.79235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.17 12.03 21.87 0.26 -40.91 14 2 C 0.02 0.87 5.49 85.30 0.47 1.34 14 3 Si 1.02 34.85 29.57 68.60 2.03 36.88 14 4 H -0.25 -8.00 7.11 99.48 0.71 -7.29 14 5 H -0.25 -8.10 7.11 99.48 0.71 -7.39 14 6 H -0.26 -8.54 7.11 99.48 0.71 -7.83 14 7 C -0.43 -22.72 9.25 23.03 0.21 -22.50 14 8 H 0.13 6.17 7.86 -2.91 -0.02 6.15 14 9 C 0.19 11.01 6.74 22.93 0.15 11.17 14 10 O -0.19 -11.30 8.97 -20.21 -0.18 -11.48 14 11 C -0.10 -5.25 7.34 23.06 0.17 -5.08 14 12 C -0.06 -2.96 6.18 -21.31 -0.13 -3.10 14 13 C -0.15 -5.86 10.07 22.35 0.23 -5.63 14 14 C -0.08 -2.57 9.97 22.02 0.22 -2.35 14 15 C -0.19 -6.65 10.00 22.41 0.22 -6.42 14 16 C 0.10 4.69 7.31 22.45 0.16 4.85 14 17 F -0.15 -7.21 17.27 44.97 0.78 -6.44 14 18 C -0.24 -12.99 7.43 23.52 0.17 -12.82 14 19 O -0.46 -21.56 13.60 -88.98 -1.21 -22.77 14 20 H 0.30 13.94 8.30 -92.71 -0.77 13.17 14 21 H 0.14 4.68 8.06 -2.91 -0.02 4.66 14 22 H 0.17 3.75 8.06 -2.91 -0.02 3.72 14 23 H 0.17 4.49 8.06 -2.91 -0.02 4.47 14 24 H 0.36 13.42 9.06 -74.06 -0.67 12.75 14 Total: -1.00 -66.99 231.94 4.14 -62.85 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.59 Total: 22.41 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 1.88 Total: -40.55 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.26 Total: -40.91 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.39 Total: -34.25 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.78 Total: -6.44 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Total: -66.99 4.14 -62.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260934775.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.833 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds