Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86804 * 120.00338 * 2 1 4 4 H 1.48503 * 109.47250 * 89.99912 * 3 2 1 5 5 H 1.48497 * 109.47330 * 210.00210 * 3 2 1 6 6 H 1.48494 * 109.46925 * 330.00090 * 3 2 1 7 7 C 1.39951 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99542 * 17.84918 * 7 2 1 9 9 C 1.41063 * 120.00665 * 197.84968 * 7 2 1 10 10 C 1.40643 * 120.27436 * 28.63697 * 9 7 2 11 11 C 1.37900 * 120.37934 * 179.97438 * 10 9 7 12 12 C 1.38333 * 120.58039 * 359.97438 * 11 10 9 13 13 C 1.39709 * 120.14159 * 0.02562 * 12 11 10 14 14 C 1.46862 * 134.19744 * 180.02562 * 13 12 11 15 15 Cl 1.73597 * 126.94889 * 359.97438 * 14 13 12 16 16 C 1.34147 * 106.10240 * 179.29085 * 14 13 12 17 17 O 1.34459 * 110.01935 * 0.59208 * 16 14 13 18 18 C 1.34507 * 110.92475 * 359.47719 * 17 16 14 19 19 H 0.97000 * 120.00649 * 175.44399 * 1 2 3 20 20 H 1.08001 * 119.81283 * 0.02562 * 10 9 7 21 21 H 1.07998 * 119.71125 * 180.02562 * 11 10 9 22 22 H 1.08000 * 119.93306 * 180.02562 * 12 11 10 23 23 H 1.08004 * 124.98463 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0464 1.4001 5 1 3.5401 1.4401 -0.7001 6 1 1.4401 2.6526 -0.7000 7 6 2.0083 -1.2120 -0.0005 8 1 1.5072 -2.1246 -0.2877 9 6 3.3680 -1.2417 0.3739 10 6 3.8747 -0.2929 1.2800 11 6 5.2035 -0.3202 1.6479 12 6 6.0567 -1.2796 1.1330 13 6 5.5777 -2.2331 0.2312 14 6 6.1872 -3.3592 -0.4880 15 17 7.8437 -3.8728 -0.4109 16 6 5.2017 -3.9202 -1.2047 17 8 4.0527 -3.2490 -1.0116 18 6 4.2309 -2.2284 -0.1537 19 1 -0.4851 -0.8373 -0.0667 20 1 3.2193 0.4609 1.6907 21 1 5.5811 0.4133 2.3449 22 1 7.0954 -1.2915 1.4286 23 1 5.3166 -4.7788 -1.8497 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260997702.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = 5.973383 kcal Electronic energy + Delta-G solvation = -12441.343190 eV Core-core repulsion = 10053.291758 eV Total energy + Delta-G solvation = -2388.051432 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.51773 -36.84200 -36.21542 -33.93070 -31.59653 -29.79273 -28.48128 -24.96802 -22.02850 -21.52486 -20.07284 -18.39815 -16.63124 -16.19587 -15.34239 -14.95262 -14.08844 -13.51240 -13.41725 -12.74556 -12.48875 -12.29676 -11.90437 -11.37314 -11.26730 -10.79040 -10.53191 -10.26637 -9.86021 -9.62870 -9.29181 -8.76937 -7.74050 -7.56868 -7.28020 -4.66876 1.85482 2.46613 2.51950 2.92462 3.15224 3.30699 3.49407 3.72571 3.91748 4.39078 5.08580 5.15462 5.65858 5.87227 6.09087 6.28261 6.44657 6.59496 6.94261 7.22528 7.27633 7.39493 7.58284 7.68763 7.77755 8.19834 8.30512 8.53348 9.83475 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.009438 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.967473 B = 2966.012484 C = 3397.994331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.042 3.958 3 Si 1.076 2.924 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.288 1.288 7 C -0.498 4.498 8 H 0.081 0.919 9 C 0.123 3.877 10 C -0.259 4.259 11 C -0.064 4.064 12 C -0.216 4.216 13 C -0.079 4.079 14 C -0.150 4.150 15 Cl -0.055 7.055 16 C 0.006 3.994 17 O -0.173 6.173 18 C -0.024 4.024 19 H 0.289 0.711 20 H 0.118 0.882 21 H 0.105 0.895 22 H 0.101 0.899 23 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 -2.764 -0.857 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.179 4.179 3 Si 0.901 3.099 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.215 1.215 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.120 3.880 10 C -0.278 4.278 11 C -0.082 4.082 12 C -0.236 4.236 13 C -0.080 4.080 14 C -0.178 4.178 15 Cl -0.026 7.026 16 C -0.063 4.063 17 O -0.073 6.073 18 C -0.070 4.070 19 H 0.100 0.900 20 H 0.136 0.864 21 H 0.123 0.877 22 H 0.119 0.881 23 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.473 -1.262 -0.926 7.636 hybrid contribution 0.454 -2.054 -0.013 2.104 sum 7.927 -3.316 -0.940 8.644 Atomic orbital electron populations 1.70541 1.08003 1.33320 1.30510 1.27419 0.95641 1.04578 0.90250 0.83542 0.75603 0.72619 0.78112 1.19977 1.18498 1.21533 1.20660 0.94784 0.97275 1.39828 0.90066 1.16717 0.92045 0.88526 0.90735 1.20755 0.96114 1.05371 1.05592 1.20492 0.93334 0.96623 0.97759 1.19685 0.98828 0.99795 1.05275 1.19255 0.92671 0.96188 0.99906 1.21749 0.86429 1.01814 1.07795 1.98270 1.16428 1.89971 1.97956 1.23449 0.83034 0.98268 1.01533 1.83894 1.32249 1.37108 1.54050 1.19849 0.94003 0.94876 0.98321 0.89971 0.86446 0.87728 0.88061 0.78321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.92 13.66 55.55 0.76 -20.16 14 2 C 0.04 1.07 5.41 -17.33 -0.09 0.98 14 3 Si 1.08 23.57 24.90 -169.99 -4.23 19.34 14 4 H -0.27 -5.59 6.44 56.52 0.36 -5.22 14 5 H -0.26 -5.73 7.03 56.52 0.40 -5.34 14 6 H -0.29 -6.11 7.11 56.52 0.40 -5.71 14 7 C -0.50 -13.27 9.43 -37.87 -0.36 -13.62 14 8 H 0.08 2.26 8.06 -52.49 -0.42 1.83 14 9 C 0.12 3.16 5.15 -106.75 -0.55 2.61 14 10 C -0.26 -6.12 7.26 -38.80 -0.28 -6.40 14 11 C -0.06 -1.36 10.00 -39.67 -0.40 -1.76 14 12 C -0.22 -4.67 10.10 -39.00 -0.39 -5.06 14 13 C -0.08 -1.78 6.39 -105.17 -0.67 -2.46 14 14 C -0.15 -2.91 6.97 -37.54 -0.26 -3.17 14 15 Cl -0.05 -0.88 29.32 -51.86 -1.52 -2.40 14 16 C 0.01 0.11 11.96 29.29 0.35 0.46 14 17 O -0.17 -3.90 10.57 4.73 0.05 -3.85 14 18 C -0.02 -0.58 7.15 -37.73 -0.27 -0.85 14 19 H 0.29 7.32 8.73 -40.82 -0.36 6.96 14 20 H 0.12 2.68 4.37 -52.49 -0.23 2.46 14 21 H 0.10 1.87 8.06 -52.49 -0.42 1.45 14 22 H 0.10 1.96 8.06 -52.49 -0.42 1.54 14 23 H 0.20 2.59 8.06 -52.48 -0.42 2.17 14 LS Contribution 224.18 15.07 3.38 3.38 Total: -1.00 -27.22 224.18 -5.61 -32.83 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -1.11 Total: 0.15 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -2.93 Total: -29.29 kcal Atomic # 7 Polarization: -20.92 SS G_CDS: 0.76 Total: -20.16 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.05 Total: -3.85 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.23 Total: 19.34 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.52 Total: -2.40 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -27.22 -5.61 -32.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997702.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.799 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds