Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86804 * 120.00338 * 2 1 4 4 H 1.48503 * 109.47250 * 89.99912 * 3 2 1 5 5 H 1.48497 * 109.47330 * 210.00210 * 3 2 1 6 6 H 1.48494 * 109.46925 * 330.00090 * 3 2 1 7 7 C 1.39951 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99542 * 17.84918 * 7 2 1 9 9 C 1.41063 * 120.00665 * 197.84968 * 7 2 1 10 10 C 1.40643 * 120.27436 * 28.63697 * 9 7 2 11 11 C 1.37900 * 120.37934 * 179.97438 * 10 9 7 12 12 C 1.38333 * 120.58039 * 359.97438 * 11 10 9 13 13 C 1.39709 * 120.14159 * 0.02562 * 12 11 10 14 14 C 1.46862 * 134.19744 * 180.02562 * 13 12 11 15 15 Cl 1.73597 * 126.94889 * 359.97438 * 14 13 12 16 16 C 1.34147 * 106.10240 * 179.29085 * 14 13 12 17 17 O 1.34459 * 110.01935 * 0.59208 * 16 14 13 18 18 C 1.34507 * 110.92475 * 359.47719 * 17 16 14 19 19 H 0.97000 * 120.00649 * 175.44399 * 1 2 3 20 20 H 1.08001 * 119.81283 * 0.02562 * 10 9 7 21 21 H 1.07998 * 119.71125 * 180.02562 * 11 10 9 22 22 H 1.08000 * 119.93306 * 180.02562 * 12 11 10 23 23 H 1.08004 * 124.98463 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0464 1.4001 5 1 3.5401 1.4401 -0.7001 6 1 1.4401 2.6526 -0.7000 7 6 2.0083 -1.2120 -0.0005 8 1 1.5072 -2.1246 -0.2877 9 6 3.3680 -1.2417 0.3739 10 6 3.8747 -0.2929 1.2800 11 6 5.2035 -0.3202 1.6479 12 6 6.0567 -1.2796 1.1330 13 6 5.5777 -2.2331 0.2312 14 6 6.1872 -3.3592 -0.4880 15 17 7.8437 -3.8728 -0.4109 16 6 5.2017 -3.9202 -1.2047 17 8 4.0527 -3.2490 -1.0116 18 6 4.2309 -2.2284 -0.1537 19 1 -0.4851 -0.8373 -0.0667 20 1 3.2193 0.4609 1.6907 21 1 5.5811 0.4133 2.3449 22 1 7.0954 -1.2915 1.4286 23 1 5.3166 -4.7788 -1.8497 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260997702.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = -9.951266 kcal Electronic energy + Delta-G solvation = -12442.033735 eV Core-core repulsion = 10053.291758 eV Total energy + Delta-G solvation = -2388.741977 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.18467 -38.62247 -37.60997 -35.77469 -33.30174 -31.55117 -30.14533 -26.82820 -23.72377 -23.25423 -21.77096 -20.22850 -18.32844 -17.84670 -17.03481 -16.63580 -15.87777 -15.21479 -15.07106 -14.48599 -14.12151 -14.02102 -13.31703 -13.04871 -12.99277 -12.56646 -12.16799 -11.83785 -11.60091 -11.46720 -11.03021 -10.43199 -9.57491 -9.37204 -9.04277 -6.63675 0.19450 0.68459 1.05417 1.25641 1.39910 1.58074 1.78672 2.14863 2.16128 2.55967 3.27819 3.57953 4.12070 4.20325 4.44034 4.67834 4.70286 4.93360 5.22861 5.34532 5.46784 5.55116 5.79750 5.90554 6.02808 6.24888 6.49662 6.67726 7.89143 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.009438 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.967473 B = 2966.012484 C = 3397.994331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.013 3.987 3 Si 1.105 2.895 4 H -0.245 1.245 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.099 3.901 10 C -0.260 4.260 11 C -0.068 4.068 12 C -0.202 4.202 13 C -0.095 4.095 14 C -0.162 4.162 15 Cl -0.021 7.021 16 C 0.024 3.976 17 O -0.198 6.198 18 C -0.058 4.058 19 H 0.279 0.721 20 H 0.124 0.876 21 H 0.148 0.852 22 H 0.131 0.869 23 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 -2.564 -0.374 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.202 4.202 3 Si 0.925 3.075 4 H -0.170 1.170 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.063 0.937 9 C 0.096 3.904 10 C -0.279 4.279 11 C -0.086 4.086 12 C -0.221 4.221 13 C -0.096 4.096 14 C -0.190 4.190 15 Cl 0.008 6.992 16 C -0.043 4.043 17 O -0.100 6.100 18 C -0.104 4.104 19 H 0.090 0.910 20 H 0.141 0.859 21 H 0.165 0.835 22 H 0.149 0.851 23 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 10.554 -1.082 -0.430 10.618 hybrid contribution -0.186 -2.316 -0.166 2.330 sum 10.368 -3.398 -0.595 10.927 Atomic orbital electron populations 1.70608 1.08469 1.32648 1.33592 1.28473 0.95758 1.06762 0.89206 0.83217 0.74542 0.70026 0.79714 1.16991 1.18859 1.20532 1.20523 0.96056 0.96607 1.43474 0.93657 1.16977 0.91825 0.90040 0.91517 1.21023 0.97460 1.04696 1.04706 1.20948 0.92227 0.97395 0.98037 1.20206 1.00199 0.98368 1.03287 1.19708 0.92269 0.97393 1.00277 1.21804 0.88438 1.01127 1.07627 1.98282 1.13598 1.89488 1.97871 1.24478 0.81280 0.98083 1.00424 1.83890 1.34506 1.37337 1.54228 1.20053 0.95032 0.95774 0.99579 0.91015 0.85903 0.83463 0.85149 0.73295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.40 13.66 21.83 0.30 -45.10 14 2 C 0.01 0.67 5.41 85.26 0.46 1.13 14 3 Si 1.11 47.33 24.90 68.60 1.71 49.04 14 4 H -0.24 -9.30 6.44 99.48 0.64 -8.66 14 5 H -0.26 -11.30 7.03 99.48 0.70 -10.60 14 6 H -0.28 -11.39 7.11 99.48 0.71 -10.68 14 7 C -0.54 -30.28 9.43 23.38 0.22 -30.06 14 8 H 0.05 2.75 8.06 -2.91 -0.02 2.73 14 9 C 0.10 5.18 5.15 -21.25 -0.11 5.07 14 10 C -0.26 -11.94 7.26 22.78 0.17 -11.77 14 11 C -0.07 -2.68 10.00 22.21 0.22 -2.46 14 12 C -0.20 -7.97 10.10 22.65 0.23 -7.75 14 13 C -0.10 -4.10 6.39 -20.22 -0.13 -4.23 14 14 C -0.16 -5.81 6.97 23.60 0.16 -5.64 14 15 Cl -0.02 -0.60 29.32 -2.72 -0.08 -0.68 14 16 C 0.02 0.83 11.96 66.89 0.80 1.63 14 17 O -0.20 -8.96 10.57 -6.00 -0.06 -9.02 14 18 C -0.06 -2.86 7.15 23.47 0.17 -2.69 14 19 H 0.28 15.20 8.73 -92.71 -0.81 14.39 14 20 H 0.12 5.43 4.37 -2.91 -0.01 5.41 14 21 H 0.15 4.50 8.06 -2.91 -0.02 4.48 14 22 H 0.13 4.39 8.06 -2.91 -0.02 4.36 14 23 H 0.25 5.47 8.06 -2.91 -0.02 5.44 14 Total: -1.00 -60.85 224.18 5.19 -55.66 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.13 Total: 6.86 kcal Atomic # 6 Polarization: -58.96 SS G_CDS: 2.19 Total: -56.77 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.30 Total: -45.10 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.06 Total: -9.02 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.71 Total: 49.04 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -60.85 5.19 -55.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997702.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.711 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds