Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31196 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47133 * 270.00614 * 3 2 1 5 5 H 1.48501 * 109.46919 * 30.00922 * 3 2 1 6 6 H 1.48505 * 109.46983 * 150.00504 * 3 2 1 7 7 C 1.39565 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.40291 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.35052 * 126.59640 * 359.97438 * 9 7 2 11 11 C 1.30375 * 109.84284 * 180.02562 * 10 9 7 12 12 N 1.36397 * 110.09077 * 0.23422 * 11 10 9 13 13 C 1.37684 * 107.18482 * 359.62715 * 12 11 10 14 14 C 1.39261 * 120.28925 * 180.14841 * 13 12 11 15 15 C 1.38088 * 119.17597 * 359.66041 * 14 13 12 16 16 C 1.40025 * 119.43558 * 0.46616 * 15 14 13 17 17 C 1.35567 * 120.36958 * 359.70840 * 16 15 14 18 18 Cl 1.73599 * 119.68372 * 179.97438 * 17 16 15 19 19 H 0.96997 * 119.99778 * 359.97438 * 1 2 3 20 20 H 1.08002 * 124.95059 * 179.97438 * 11 10 9 21 21 H 1.08001 * 120.40684 * 180.22363 * 14 13 12 22 22 H 1.08001 * 120.28033 * 180.15300 * 15 14 13 23 23 H 1.08002 * 119.81331 * 179.68882 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6177 0.0000 4 1 2.4934 2.0465 -1.4001 5 1 1.4435 2.6526 0.7002 6 1 3.5436 1.4400 0.7000 7 6 2.0098 -1.2087 -0.0005 8 1 3.0897 -1.2087 -0.0010 9 6 1.3083 -2.4236 -0.0005 10 7 -0.0333 -2.5787 0.0004 11 6 -0.3320 -3.8478 0.0006 12 7 0.8075 -4.5974 0.0051 13 6 1.8702 -3.7221 -0.0009 14 6 3.1769 -4.2037 -0.0013 15 6 3.3916 -5.5678 0.0114 16 6 2.2939 -6.4371 0.0145 17 6 1.0304 -5.9458 0.0111 18 17 -0.3175 -7.0398 0.0144 19 1 -0.4850 0.8400 0.0004 20 1 -1.3355 -4.2472 0.0018 21 1 4.0120 -3.5188 -0.0023 22 1 4.3975 -5.9607 0.0137 23 1 2.4547 -7.5051 0.0193 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261007515.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = 71.549849 kcal Electronic energy + Delta-G solvation = -12398.808140 eV Core-core repulsion = 10045.893068 eV Total energy + Delta-G solvation = -2352.915072 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.97173 -36.65046 -35.61251 -33.72313 -31.61529 -29.56772 -28.00642 -24.89512 -22.63693 -21.19910 -20.39120 -17.60651 -15.97346 -15.86934 -15.10881 -14.62901 -14.55611 -13.78358 -13.28930 -12.73198 -11.99210 -11.62719 -11.39691 -11.31479 -10.97168 -10.73102 -10.61123 -10.44700 -10.23719 -9.76266 -8.91383 -8.48729 -8.05045 -6.67936 -6.67235 -4.21261 1.74274 2.33963 2.36297 3.02954 3.06327 3.09932 3.88466 4.01086 4.30381 4.39486 5.44847 5.62567 5.72670 5.90444 6.03162 6.21832 6.61067 6.92826 6.95175 7.06359 7.26056 7.33842 7.77202 8.07157 8.43810 8.57317 8.83872 9.59748 10.22021 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.050549 B = 0.008504 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.784501 B = 3291.693674 C = 3835.625613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.406 4.406 8 H 0.088 0.912 9 C 0.227 3.773 10 N -0.461 5.461 11 C 0.168 3.832 12 N -0.397 5.397 13 C -0.143 4.143 14 C 0.022 3.978 15 C -0.278 4.278 16 C -0.080 4.080 17 C 0.064 3.936 18 Cl -0.071 7.071 19 H 0.278 0.722 20 H 0.183 0.817 21 H 0.125 0.875 22 H 0.115 0.885 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 -5.735 0.011 6.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.158 4.158 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.440 4.440 8 H 0.106 0.894 9 C 0.100 3.900 10 N -0.182 5.182 11 C -0.109 4.109 12 N -0.083 5.083 13 C -0.242 4.242 14 C 0.002 3.998 15 C -0.298 4.298 16 C -0.104 4.104 17 C -0.060 4.060 18 Cl -0.043 7.043 19 H 0.088 0.912 20 H 0.200 0.800 21 H 0.143 0.857 22 H 0.133 0.867 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.341 -5.135 0.019 5.307 hybrid contribution 0.594 -0.234 -0.008 0.639 sum 1.935 -5.369 0.011 5.707 Atomic orbital electron populations 1.70166 1.07045 1.28545 1.30167 1.26005 0.95046 1.01234 0.93542 0.86176 0.80250 0.80285 0.79267 1.19344 1.20082 1.18451 1.18635 0.94287 0.88289 1.42787 0.89370 1.18442 0.87726 0.89593 0.94247 1.70971 1.14320 1.11463 1.21472 1.25228 0.90530 0.87231 1.07878 1.42281 1.08821 1.02570 1.54614 1.19181 0.87190 0.90540 1.27241 1.20430 0.93861 0.94805 0.90695 1.20375 0.96951 0.92419 1.20056 1.20096 0.89108 0.99542 1.01617 1.20292 0.88085 0.80646 1.17000 1.98317 1.47475 1.60939 1.97583 0.91162 0.80037 0.85698 0.86682 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.38 11.94 55.53 0.66 -18.72 14 2 C 0.07 1.63 5.49 -17.33 -0.10 1.53 14 3 Si 0.92 18.15 29.56 -169.99 -5.02 13.13 14 4 H -0.27 -5.25 7.11 56.52 0.40 -4.84 14 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 14 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 14 7 C -0.41 -10.58 9.33 -38.32 -0.36 -10.94 14 8 H 0.09 2.11 7.84 -52.49 -0.41 1.69 14 9 C 0.23 6.15 6.71 -84.44 -0.57 5.59 14 10 N -0.46 -12.55 9.41 -11.68 -0.11 -12.66 14 11 C 0.17 4.00 12.34 -89.23 -1.10 2.90 14 12 N -0.40 -9.26 2.95 -58.55 -0.17 -9.44 14 13 C -0.14 -3.54 6.78 -83.62 -0.57 -4.11 14 14 C 0.02 0.47 10.12 -39.26 -0.40 0.07 14 15 C -0.28 -5.25 10.15 -38.97 -0.40 -5.65 14 16 C -0.08 -1.48 9.73 -39.87 -0.39 -1.87 14 17 C 0.06 1.30 7.26 -16.35 -0.12 1.18 14 18 Cl -0.07 -1.19 28.67 -51.86 -1.49 -2.68 14 19 H 0.28 6.61 8.30 -40.82 -0.34 6.27 14 20 H 0.18 3.68 8.06 -52.49 -0.42 3.26 14 21 H 0.13 2.36 8.06 -52.49 -0.42 1.94 14 22 H 0.12 1.83 8.06 -52.49 -0.42 1.40 14 23 H 0.13 1.92 8.06 -52.49 -0.42 1.50 14 LS Contribution 230.13 15.07 3.47 3.47 Total: -1.00 -28.68 230.13 -7.89 -36.56 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -1.24 Total: 1.62 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.99 Total: -11.29 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.38 Total: -40.81 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.49 Total: -2.68 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.68 -7.89 -36.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007515.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.112 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds