Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31196 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47133 * 270.00614 * 3 2 1 5 5 H 1.48501 * 109.46919 * 30.00922 * 3 2 1 6 6 H 1.48505 * 109.46983 * 150.00504 * 3 2 1 7 7 C 1.39565 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.40291 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.35052 * 126.59640 * 359.97438 * 9 7 2 11 11 C 1.30375 * 109.84284 * 180.02562 * 10 9 7 12 12 N 1.36397 * 110.09077 * 0.23422 * 11 10 9 13 13 C 1.37684 * 107.18482 * 359.62715 * 12 11 10 14 14 C 1.39261 * 120.28925 * 180.14841 * 13 12 11 15 15 C 1.38088 * 119.17597 * 359.66041 * 14 13 12 16 16 C 1.40025 * 119.43558 * 0.46616 * 15 14 13 17 17 C 1.35567 * 120.36958 * 359.70840 * 16 15 14 18 18 Cl 1.73599 * 119.68372 * 179.97438 * 17 16 15 19 19 H 0.96997 * 119.99778 * 359.97438 * 1 2 3 20 20 H 1.08002 * 124.95059 * 179.97438 * 11 10 9 21 21 H 1.08001 * 120.40684 * 180.22363 * 14 13 12 22 22 H 1.08001 * 120.28033 * 180.15300 * 15 14 13 23 23 H 1.08002 * 119.81331 * 179.68882 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6177 0.0000 4 1 2.4934 2.0465 -1.4001 5 1 1.4435 2.6526 0.7002 6 1 3.5436 1.4400 0.7000 7 6 2.0098 -1.2087 -0.0005 8 1 3.0897 -1.2087 -0.0010 9 6 1.3083 -2.4236 -0.0005 10 7 -0.0333 -2.5787 0.0004 11 6 -0.3320 -3.8478 0.0006 12 7 0.8075 -4.5974 0.0051 13 6 1.8702 -3.7221 -0.0009 14 6 3.1769 -4.2037 -0.0013 15 6 3.3916 -5.5678 0.0114 16 6 2.2939 -6.4371 0.0145 17 6 1.0304 -5.9458 0.0111 18 17 -0.3175 -7.0398 0.0144 19 1 -0.4850 0.8400 0.0004 20 1 -1.3355 -4.2472 0.0018 21 1 4.0120 -3.5188 -0.0023 22 1 4.3975 -5.9607 0.0137 23 1 2.4547 -7.5051 0.0193 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261007515.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = 56.408950 kcal Electronic energy + Delta-G solvation = -12399.464699 eV Core-core repulsion = 10045.893068 eV Total energy + Delta-G solvation = -2353.571631 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.76190 -38.24911 -37.21490 -35.47654 -33.37980 -31.29524 -29.76841 -26.67866 -24.30914 -22.93493 -22.20664 -19.36359 -17.74068 -17.51778 -16.75986 -16.34626 -16.21561 -15.45340 -14.94341 -14.46711 -13.59550 -13.24827 -12.93972 -12.88410 -12.54665 -12.49305 -12.13076 -12.05495 -11.84774 -11.47645 -10.66745 -10.35849 -9.79818 -8.45041 -8.43494 -6.05752 0.09581 0.66141 0.77696 1.44371 1.48313 1.59241 2.24038 2.30860 2.49521 2.70209 3.57879 3.97557 4.20255 4.29667 4.45199 4.52767 4.93533 5.21867 5.29896 5.36754 5.52173 5.65442 6.04443 6.24845 6.67873 6.78575 7.02339 7.77531 8.50699 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.050549 B = 0.008504 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.784501 B = 3291.693674 C = 3835.625613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.020 3.980 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.452 4.452 8 H 0.095 0.905 9 C 0.181 3.819 10 N -0.496 5.496 11 C 0.137 3.863 12 N -0.391 5.391 13 C -0.158 4.158 14 C -0.011 4.011 15 C -0.229 4.229 16 C -0.085 4.085 17 C 0.053 3.947 18 Cl -0.038 7.038 19 H 0.279 0.721 20 H 0.207 0.793 21 H 0.142 0.858 22 H 0.160 0.840 23 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -8.076 0.033 9.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.198 4.198 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.486 4.486 8 H 0.113 0.887 9 C 0.053 3.947 10 N -0.218 5.218 11 C -0.138 4.138 12 N -0.074 5.074 13 C -0.258 4.258 14 C -0.031 4.031 15 C -0.248 4.248 16 C -0.107 4.107 17 C -0.072 4.072 18 Cl -0.010 7.010 19 H 0.089 0.911 20 H 0.223 0.777 21 H 0.160 0.840 22 H 0.178 0.822 23 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.221 -7.517 0.041 8.178 hybrid contribution 0.103 -0.059 -0.015 0.120 sum 3.324 -7.576 0.026 8.273 Atomic orbital electron populations 1.70284 1.08806 1.29355 1.33268 1.26933 0.95767 1.04642 0.92455 0.85030 0.78880 0.75359 0.79335 1.18837 1.19711 1.17493 1.18914 0.94729 0.89093 1.45839 0.88710 1.18878 0.88052 0.91199 0.96601 1.70811 1.15276 1.13538 1.22174 1.25519 0.91614 0.86779 1.09917 1.42514 1.08476 1.03880 1.52549 1.19572 0.88825 0.90275 1.27119 1.20781 0.93004 0.96583 0.92767 1.21089 0.99314 0.91267 1.13172 1.20759 0.88087 1.01911 0.99991 1.20959 0.90369 0.80010 1.15819 1.98335 1.46032 1.59204 1.97393 0.91076 0.77669 0.84026 0.82199 0.81175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.26 11.94 21.78 0.26 -44.00 14 2 C 0.02 1.03 5.49 85.11 0.47 1.50 14 3 Si 0.99 38.66 29.56 68.60 2.03 40.69 14 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 14 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 14 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 14 7 C -0.45 -24.67 9.33 23.09 0.22 -24.46 14 8 H 0.09 4.73 7.84 -2.91 -0.02 4.70 14 9 C 0.18 10.24 6.71 39.95 0.27 10.50 14 10 N -0.50 -28.42 9.41 -190.87 -1.80 -30.22 14 11 C 0.14 6.68 12.34 179.86 2.22 8.90 14 12 N -0.39 -18.00 2.95 -339.14 -1.00 -19.00 14 13 C -0.16 -7.80 6.78 39.27 0.27 -7.53 14 14 C -0.01 -0.46 10.12 22.48 0.23 -0.24 14 15 C -0.23 -7.45 10.15 22.67 0.23 -7.22 14 16 C -0.08 -2.70 9.73 22.08 0.21 -2.48 14 17 C 0.05 2.00 7.26 83.32 0.60 2.61 14 18 Cl -0.04 -1.16 28.67 -2.72 -0.08 -1.23 14 19 H 0.28 14.17 8.30 -92.71 -0.77 13.40 14 20 H 0.21 8.48 8.06 -2.91 -0.02 8.46 14 21 H 0.14 5.12 8.06 -2.91 -0.02 5.09 14 22 H 0.16 3.89 8.06 -2.91 -0.02 3.86 14 23 H 0.17 4.00 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -65.29 230.13 5.36 -59.93 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.23 Total: 12.25 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.71 Total: -18.42 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -2.54 Total: -93.22 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.23 kcal Total: -65.29 5.36 -59.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007515.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.336 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds