Wall clock time and date at job start Mon Mar 30 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48506 * 109.47108 * 240.00264 * 3 2 1 5 5 H 1.48501 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47225 * 119.99992 * 3 2 1 7 7 C 1.39874 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00570 * 197.48329 * 7 2 1 9 9 C 1.41281 * 119.99908 * 17.48553 * 7 2 1 10 10 C 1.40357 * 120.01977 * 25.31275 * 9 7 2 11 11 C 1.39075 * 119.43412 * 179.97438 * 10 9 7 12 12 N 1.35968 * 133.43414 * 179.97438 * 11 10 9 13 13 C 1.30042 * 109.55422 * 180.02562 * 12 11 10 14 14 N 1.36147 * 110.18505 * 0.27157 * 13 12 11 15 15 H 0.97002 * 126.29045 * 179.73608 * 14 13 12 16 16 C 1.37776 * 107.42392 * 359.56621 * 14 13 12 17 17 C 1.39318 * 133.72773 * 180.10435 * 16 14 13 18 18 C 1.36277 * 120.27339 * 180.34722 * 17 16 14 19 19 Cl 1.73597 * 119.83289 * 180.02562 * 18 17 16 20 20 H 0.97008 * 120.00459 * 4.58390 * 1 2 3 21 21 H 1.07997 * 120.28256 * 0.02562 * 10 9 7 22 22 H 1.08000 * 124.90913 * 180.02562 * 13 12 11 23 23 H 1.07996 * 119.86316 * 0.36113 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0082 -1.2113 0.0005 8 1 3.0507 -1.2329 0.2815 9 6 1.3508 -2.4068 -0.3666 10 6 0.2298 -2.3612 -1.2099 11 6 -0.4077 -3.5454 -1.5640 12 7 -1.4866 -3.8301 -2.3410 13 6 -1.6852 -5.1152 -2.3559 14 7 -0.7540 -5.7435 -1.5867 15 1 -0.6873 -6.6987 -1.4313 16 6 0.0787 -4.7737 -1.0724 17 6 1.1926 -4.8053 -0.2363 18 6 1.8218 -3.6484 0.1139 19 17 3.2092 -3.7011 1.1560 20 1 -0.4851 0.8374 -0.0671 21 1 -0.1341 -1.4146 -1.5814 22 1 -2.4771 -5.6120 -2.8968 23 1 1.5590 -5.7506 0.1358 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021884.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:32 Heat of formation + Delta-G solvation = 51.291581 kcal Electronic energy + Delta-G solvation = -12398.081758 eV Core-core repulsion = 10044.288221 eV Total energy + Delta-G solvation = -2353.793537 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.85670 -36.63665 -34.96611 -33.27411 -32.00351 -29.21712 -28.13464 -25.15668 -22.02417 -21.06469 -20.16501 -17.40875 -17.17554 -15.87662 -15.01013 -14.26372 -14.14980 -13.39984 -12.89466 -12.75054 -12.21356 -11.88775 -11.29333 -11.10410 -10.85777 -10.41722 -10.21968 -9.79890 -9.60724 -9.60071 -9.10578 -8.92306 -7.28578 -6.99672 -6.73528 -4.32954 2.08822 2.72387 3.11626 3.13694 3.20054 3.31511 3.77251 3.95153 3.98810 4.60666 5.18372 5.50101 5.72409 6.02870 6.50285 6.61360 6.67002 7.09761 7.20460 7.36836 7.63972 7.90238 7.94612 8.24356 8.42697 8.77282 8.80537 8.91898 10.20579 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.011557 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.455193 B = 2422.257889 C = 3334.669059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.450 4.450 8 H 0.087 0.913 9 C 0.105 3.895 10 C -0.130 4.130 11 C 0.075 3.925 12 N -0.510 5.510 13 C 0.234 3.766 14 N -0.612 5.612 15 H 0.408 0.592 16 C -0.041 4.041 17 C -0.096 4.096 18 C -0.073 4.073 19 Cl -0.103 7.103 20 H 0.283 0.717 21 H 0.133 0.867 22 H 0.199 0.801 23 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -6.372 -1.202 6.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.479 4.479 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.152 4.152 11 C -0.040 4.040 12 N -0.233 5.233 13 C -0.053 4.053 14 N -0.227 5.227 15 H 0.244 0.756 16 C -0.146 4.146 17 C -0.118 4.118 18 C -0.102 4.102 19 Cl -0.075 7.075 20 H 0.094 0.906 21 H 0.150 0.850 22 H 0.215 0.785 23 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.218 -5.489 -1.433 5.677 hybrid contribution 0.801 -0.503 0.590 1.115 sum 0.583 -5.992 -0.843 6.079 Atomic orbital electron populations 1.69836 1.07497 1.29825 1.34101 1.25860 0.94678 1.01279 0.92347 0.86382 0.80170 0.80306 0.80047 1.18769 1.20359 1.18916 1.19472 0.98215 0.90682 1.39545 0.89494 1.17133 0.91877 0.90619 0.90407 1.20321 0.98682 0.94941 1.01272 1.19085 0.93762 0.93296 0.97865 1.70402 1.17886 1.12462 1.22514 1.24950 0.94713 0.89461 0.96216 1.42675 1.27328 1.08513 1.44160 0.75608 1.18308 0.98931 0.89430 1.07960 1.18857 0.95526 0.96574 1.00872 1.20400 0.93595 0.94802 1.01355 1.98228 1.43473 1.98753 1.67042 0.90589 0.84954 0.78483 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.97 55.54 0.61 -19.90 14 2 C 0.08 1.92 5.13 -17.34 -0.09 1.83 14 3 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 14 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 14 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 14 7 C -0.45 -11.71 8.49 -37.81 -0.32 -12.03 14 8 H 0.09 2.19 7.08 -52.49 -0.37 1.82 14 9 C 0.10 2.75 5.57 -106.81 -0.59 2.16 14 10 C -0.13 -3.47 8.73 -38.47 -0.34 -3.81 14 11 C 0.07 1.86 7.21 -84.69 -0.61 1.25 14 12 N -0.51 -11.53 11.28 -12.04 -0.14 -11.66 14 13 C 0.23 4.00 12.96 -89.74 -1.16 2.84 14 14 N -0.61 -10.36 6.22 -11.58 -0.07 -10.43 14 15 H 0.41 5.07 8.96 -40.82 -0.37 4.70 14 16 C -0.04 -0.90 7.31 -83.76 -0.61 -1.51 14 17 C -0.10 -2.09 9.75 -39.89 -0.39 -2.48 14 18 C -0.07 -1.74 6.33 -39.16 -0.25 -1.99 14 19 Cl -0.10 -2.18 27.52 -51.86 -1.43 -3.60 14 20 H 0.28 6.76 8.30 -40.82 -0.34 6.42 14 21 H 0.13 3.72 6.19 -52.49 -0.32 3.40 14 22 H 0.20 2.22 8.06 -52.49 -0.42 1.80 14 23 H 0.10 1.92 8.06 -52.49 -0.42 1.50 14 LS Contribution 225.05 15.07 3.39 3.39 Total: -1.00 -29.74 225.05 -8.07 -37.81 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -1.04 Total: 4.42 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -4.36 Total: -13.74 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.40 Total: -42.00 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.43 Total: -3.60 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.74 -8.07 -37.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021884.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.101 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds