Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86810 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47291 * 270.00076 * 3 2 1 5 5 H 1.48498 * 109.46661 * 30.00352 * 3 2 1 6 6 H 1.48501 * 109.46727 * 149.99973 * 3 2 1 7 7 C 1.39892 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00127 * 198.05461 * 7 2 1 9 9 C 1.40990 * 119.99436 * 18.05930 * 7 2 1 10 10 C 1.41223 * 119.91932 * 204.94832 * 9 7 2 11 11 C 1.35870 * 120.16816 * 179.97438 * 10 9 7 12 12 C 1.40184 * 120.03871 * 0.02562 * 11 10 9 13 13 C 1.46202 * 133.98445 * 180.02562 * 12 11 10 14 14 C 1.34821 * 106.24518 * 180.02562 * 13 12 11 15 15 Cl 1.73601 * 124.93915 * 179.97438 * 14 13 12 16 16 O 1.34324 * 110.12756 * 0.02562 * 14 13 12 17 17 C 1.34992 * 110.82124 * 359.97438 * 16 14 13 18 18 C 1.38021 * 133.21314 * 180.02562 * 17 16 14 19 19 H 0.96992 * 119.99825 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.91166 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.97918 * 179.72114 * 11 10 9 22 22 H 1.07994 * 126.87432 * 0.02562 * 13 12 11 23 23 H 1.07997 * 120.18000 * 359.95693 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0466 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5404 1.4402 0.7001 7 6 2.0083 -1.2115 -0.0005 8 1 3.0485 -1.2346 0.2893 9 6 1.3555 -2.4022 -0.3796 10 6 1.8281 -3.6460 0.0936 11 6 1.2025 -4.7966 -0.2681 12 6 0.0851 -4.7519 -1.1134 13 6 -0.7992 -5.7680 -1.6820 14 6 -1.7053 -5.1046 -2.4281 15 17 -2.9909 -5.8497 -3.3257 16 8 -1.4680 -3.7835 -2.3768 17 6 -0.3988 -3.5179 -1.5968 18 6 0.2365 -2.3487 -1.2303 19 1 -0.4849 0.8400 -0.0004 20 1 2.6891 -3.6827 0.7446 21 1 1.5692 -5.7465 0.0919 22 1 -0.7387 -6.8360 -1.5339 23 1 -0.1240 -1.3979 -1.5940 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261024401.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = -2.912076 kcal Electronic energy + Delta-G solvation = -12222.888296 eV Core-core repulsion = 9834.451561 eV Total energy + Delta-G solvation = -2388.436735 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.94241 -38.61288 -37.83513 -35.56635 -33.13614 -30.93353 -30.55942 -26.89685 -23.84125 -22.66221 -21.92471 -19.36289 -18.28462 -17.84246 -17.04191 -16.69481 -15.87794 -14.98901 -14.52861 -14.37560 -13.91951 -13.51837 -13.19514 -12.99485 -12.84632 -12.63659 -12.37835 -12.11964 -11.86654 -11.44108 -11.16395 -10.53610 -9.32842 -8.91153 -8.74026 -6.42971 0.30458 0.32900 0.92498 1.35751 1.41227 1.54833 1.67920 2.17426 2.60917 2.69566 3.56086 4.02948 4.30531 4.38516 4.68234 4.84822 5.03200 5.15056 5.21728 5.44455 5.71352 5.82491 5.92969 5.99370 6.24616 6.59105 6.77597 6.83885 8.20711 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.050470 B = 0.007387 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.655801 B = 3789.716387 C = 4267.677545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.030 3.970 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.248 1.248 7 C -0.473 4.473 8 H 0.097 0.903 9 C 0.109 3.891 10 C -0.215 4.215 11 C -0.043 4.043 12 C -0.262 4.262 13 C -0.131 4.131 14 C -0.009 4.009 15 Cl 0.026 6.974 16 O -0.228 6.228 17 C 0.076 3.924 18 C -0.224 4.224 19 H 0.292 0.708 20 H 0.127 0.873 21 H 0.142 0.858 22 H 0.187 0.813 23 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 -5.385 -1.813 5.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.171 1.171 7 C -0.500 4.500 8 H 0.115 0.885 9 C 0.106 3.894 10 C -0.233 4.233 11 C -0.061 4.061 12 C -0.264 4.264 13 C -0.151 4.151 14 C -0.081 4.081 15 Cl 0.054 6.946 16 O -0.134 6.134 17 C 0.030 3.970 18 C -0.244 4.244 19 H 0.103 0.897 20 H 0.145 0.855 21 H 0.159 0.841 22 H 0.205 0.795 23 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.595 -5.119 -2.000 5.528 hybrid contribution -0.284 0.735 -0.199 0.813 sum -0.879 -4.384 -2.199 4.982 Atomic orbital electron populations 1.69932 1.09520 1.31220 1.32882 1.26996 0.95455 1.05301 0.90958 0.85073 0.79280 0.75093 0.79568 1.18886 1.19362 1.17127 1.19946 0.99073 0.91789 1.39211 0.88466 1.17673 0.89957 0.93987 0.87825 1.21103 1.04241 0.92135 1.05863 1.20165 0.92610 0.98615 0.94757 1.19693 1.03957 0.91583 1.11189 1.22312 0.93992 1.00141 0.98683 1.22313 0.98228 0.81976 1.05618 1.98351 1.46940 1.75845 1.73447 1.83719 1.44130 1.24817 1.60746 1.19801 0.86804 0.97041 0.93365 1.19911 1.03333 0.93322 1.07878 0.89706 0.85478 0.84053 0.79545 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.03 10.98 21.82 0.24 -41.79 14 2 C 0.03 1.46 5.12 85.24 0.44 1.90 14 3 Si 0.99 36.16 29.60 68.60 2.03 38.19 14 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 14 5 H -0.27 -9.43 7.11 99.48 0.71 -8.72 14 6 H -0.25 -8.53 7.11 99.48 0.71 -7.82 14 7 C -0.47 -23.98 9.01 23.35 0.21 -23.77 14 8 H 0.10 4.55 7.91 -2.91 -0.02 4.52 14 9 C 0.11 5.72 5.57 -21.28 -0.12 5.60 14 10 C -0.21 -9.81 9.71 22.45 0.22 -9.59 14 11 C -0.04 -1.82 10.03 22.19 0.22 -1.60 14 12 C -0.26 -11.94 6.40 -20.04 -0.13 -12.07 14 13 C -0.13 -4.97 11.09 23.55 0.26 -4.71 14 14 C -0.01 -0.37 7.85 67.03 0.53 0.15 14 15 Cl 0.03 0.77 29.28 -2.72 -0.08 0.70 14 16 O -0.23 -11.15 10.59 -9.59 -0.10 -11.25 14 17 C 0.08 3.96 7.38 22.92 0.17 4.13 14 18 C -0.22 -12.38 8.69 22.81 0.20 -12.18 14 19 H 0.29 13.67 8.30 -92.71 -0.77 12.90 14 20 H 0.13 5.10 8.06 -2.91 -0.02 5.08 14 21 H 0.14 4.66 8.06 -2.91 -0.02 4.64 14 22 H 0.19 5.34 8.06 -2.91 -0.02 5.31 14 23 H 0.10 5.96 6.18 -2.91 -0.02 5.94 14 Total: -1.00 -58.59 229.16 5.32 -53.27 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.24 Total: 13.03 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 1.99 Total: -52.15 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.24 Total: -41.79 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.10 Total: -11.25 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.70 kcal Total: -58.59 5.32 -53.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024401.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.355 kcal (2) G-P(sol) polarization free energy of solvation -58.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds