Wall clock time and date at job start Mon Mar 30 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86800 * 120.00348 * 2 1 4 4 H 1.48494 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47086 * 300.00502 * 3 2 1 6 6 H 1.48500 * 109.46879 * 60.00559 * 3 2 1 7 7 C 1.40097 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00421 * 179.97438 * 7 2 1 9 9 C 1.41545 * 120.00058 * 359.97438 * 7 2 1 10 10 N 1.34036 * 120.64835 * 0.02562 * 9 7 2 11 11 C 1.32142 * 120.42412 * 179.97438 * 10 9 7 12 12 S 1.76199 * 119.04146 * 179.97438 * 11 10 9 13 13 N 1.32783 * 121.92000 * 359.97438 * 11 10 9 14 14 C 1.32474 * 121.22732 * 0.02562 * 13 11 10 15 15 C 1.38232 * 119.16607 * 359.72919 * 14 13 11 16 16 C 1.51038 * 109.94586 * 180.32871 * 15 14 13 17 17 C 1.54421 * 105.13338 * 17.25547 * 16 15 14 18 18 C 1.51222 * 131.14390 * 179.97438 * 14 13 11 19 19 H 0.97004 * 119.99281 * 359.97438 * 1 2 3 20 20 H 1.41000 * 100.00080 * 89.99866 * 12 11 10 21 21 H 1.09002 * 110.31290 * 136.17337 * 16 15 14 22 22 H 1.09003 * 110.31602 * 258.24206 * 16 15 14 23 23 H 1.08999 * 110.81620 * 92.12509 * 17 16 15 24 24 H 1.09002 * 110.81785 * 215.46132 * 17 16 15 25 25 H 1.08995 * 110.29504 * 281.87265 * 18 14 13 26 26 H 1.08992 * 110.30094 * 44.01462 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 -0.0006 5 1 1.8821 2.3965 -1.2125 6 1 1.8823 2.3963 1.2126 7 6 2.0072 -1.2133 -0.0005 8 1 3.0872 -1.2134 -0.0010 9 6 1.2995 -2.4391 -0.0005 10 7 -0.0408 -2.4542 -0.0005 11 6 -0.6971 -3.6011 -0.0011 12 16 -2.4589 -3.5785 -0.0003 13 7 -0.0675 -4.7702 -0.0021 14 6 1.2555 -4.8379 -0.0021 15 6 1.9899 -3.6668 -0.0068 16 6 3.4664 -3.9846 -0.0141 17 6 3.5588 -5.4614 -0.4556 18 6 2.1910 -6.0259 -0.0027 19 1 -0.4849 0.8401 0.0004 20 1 -2.7043 -3.5744 -1.3888 21 1 3.9879 -3.3438 -0.7251 22 1 3.8853 -3.8598 0.9845 23 1 3.6782 -5.5359 -1.5365 24 1 4.3749 -5.9691 0.0585 25 1 2.2597 -6.4535 0.9976 26 1 1.8474 -6.7775 -0.7133 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064040.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:42 Heat of formation + Delta-G solvation = 35.063364 kcal Electronic energy + Delta-G solvation = -12787.631202 eV Core-core repulsion = 10571.010758 eV Total energy + Delta-G solvation = -2216.620444 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.47986 -35.66806 -34.10421 -31.52016 -29.11824 -27.13767 -26.21090 -22.50660 -21.35068 -19.94028 -17.68901 -16.81905 -16.08385 -15.05009 -15.03024 -14.34443 -13.32005 -13.04430 -12.61565 -12.39334 -12.20067 -11.59832 -11.42637 -11.16884 -11.02461 -10.62259 -10.46710 -10.31186 -10.28441 -9.76439 -9.02069 -8.62966 -7.84326 -7.60723 -7.32660 -6.59016 -4.85188 2.02106 2.51839 2.72058 2.99647 3.04110 3.07185 3.37590 3.80338 4.58522 5.03058 5.31070 5.50715 5.55575 5.76213 6.06179 6.20189 6.26257 6.38768 6.50058 6.55272 6.72319 6.80213 6.96093 7.19617 7.59194 7.90772 8.32654 8.60459 8.83251 9.79774 10.08844 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.012933 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.410292 B = 2164.530963 C = 3396.356313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.065 3.935 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.409 4.409 8 H 0.091 0.909 9 C 0.273 3.727 10 N -0.467 5.467 11 C 0.300 3.700 12 S -0.085 6.085 13 N -0.581 5.581 14 C 0.142 3.858 15 C -0.283 4.283 16 C -0.049 4.049 17 C -0.118 4.118 18 C -0.060 4.060 19 H 0.279 0.721 20 H 0.088 0.912 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -2.866 -0.735 4.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.163 4.163 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.443 4.443 8 H 0.110 0.890 9 C 0.142 3.858 10 N -0.188 5.188 11 C -0.081 4.081 12 S 0.069 5.931 13 N -0.306 5.306 14 C 0.000 4.000 15 C -0.292 4.292 16 C -0.088 4.088 17 C -0.156 4.156 18 C -0.098 4.098 19 H 0.090 0.910 20 H 0.052 0.948 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.718 -2.683 -0.494 3.224 hybrid contribution 2.080 0.767 -0.926 2.403 sum 3.798 -1.915 -1.421 4.484 Atomic orbital electron populations 1.70089 1.07271 1.28570 1.26156 1.26193 0.95039 1.01509 0.93583 0.86186 0.80805 0.80628 0.78831 1.18176 1.19629 1.19501 1.19732 0.94568 0.88835 1.41171 0.89044 1.18474 0.87519 0.91451 0.88370 1.70018 1.07669 1.24690 1.16473 1.23442 0.97086 0.87215 1.00379 1.86062 0.97954 1.97951 1.11167 1.67879 1.09117 1.28921 1.24684 1.21447 0.89716 0.94793 0.94057 1.21765 0.96203 0.95618 1.15628 1.20463 0.93393 0.94600 1.00325 1.22359 0.96097 0.96539 1.00636 1.20835 0.92592 0.94953 1.01435 0.90955 0.94805 0.91993 0.92045 0.91591 0.91304 0.90502 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.15 11.52 55.55 0.64 -17.51 15 2 C 0.06 1.58 5.50 -17.34 -0.10 1.49 15 3 Si 0.91 17.76 29.56 -169.99 -5.02 12.73 15 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.41 -10.53 9.09 -37.63 -0.34 -10.87 15 8 H 0.09 2.17 7.60 -52.49 -0.40 1.77 15 9 C 0.27 7.41 6.58 -84.66 -0.56 6.85 15 10 N -0.47 -13.12 8.01 -11.40 -0.09 -13.21 15 11 C 0.30 7.90 7.91 -91.00 -0.72 7.18 15 12 S -0.09 -1.87 26.15 -107.50 -2.81 -4.68 15 13 N -0.58 -14.82 10.38 -9.60 -0.10 -14.92 15 14 C 0.14 3.34 7.37 -82.06 -0.60 2.74 15 15 C -0.28 -6.82 6.10 -103.47 -0.63 -7.45 15 16 C -0.05 -0.93 6.34 -26.97 -0.17 -1.10 15 17 C -0.12 -1.84 7.10 -25.07 -0.18 -2.02 15 18 C -0.06 -1.06 6.78 -26.71 -0.18 -1.24 15 19 H 0.28 6.50 8.29 -40.82 -0.34 6.16 15 20 H 0.09 1.76 9.55 96.90 0.93 2.69 15 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 243.99 15.07 3.68 3.68 Total: -1.00 -29.56 243.99 -8.33 -37.89 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -1.14 Total: 0.45 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.48 Total: -4.43 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.45 Total: -45.64 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.02 Total: 12.73 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.81 Total: -4.68 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.56 -8.33 -37.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064040.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.955 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds