Wall clock time and date at job start Mon Mar 30 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86800 * 120.00348 * 2 1 4 4 H 1.48494 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47086 * 300.00502 * 3 2 1 6 6 H 1.48500 * 109.46879 * 60.00559 * 3 2 1 7 7 C 1.40097 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00421 * 179.97438 * 7 2 1 9 9 C 1.41545 * 120.00058 * 359.97438 * 7 2 1 10 10 N 1.34036 * 120.64835 * 0.02562 * 9 7 2 11 11 C 1.32142 * 120.42412 * 179.97438 * 10 9 7 12 12 S 1.76199 * 119.04146 * 179.97438 * 11 10 9 13 13 N 1.32783 * 121.92000 * 359.97438 * 11 10 9 14 14 C 1.32474 * 121.22732 * 0.02562 * 13 11 10 15 15 C 1.38232 * 119.16607 * 359.72919 * 14 13 11 16 16 C 1.51038 * 109.94586 * 180.32871 * 15 14 13 17 17 C 1.54421 * 105.13338 * 17.25547 * 16 15 14 18 18 C 1.51222 * 131.14390 * 179.97438 * 14 13 11 19 19 H 0.97004 * 119.99281 * 359.97438 * 1 2 3 20 20 H 1.41000 * 100.00080 * 89.99866 * 12 11 10 21 21 H 1.09002 * 110.31290 * 136.17337 * 16 15 14 22 22 H 1.09003 * 110.31602 * 258.24206 * 16 15 14 23 23 H 1.08999 * 110.81620 * 92.12509 * 17 16 15 24 24 H 1.09002 * 110.81785 * 215.46132 * 17 16 15 25 25 H 1.08995 * 110.29504 * 281.87265 * 18 14 13 26 26 H 1.08992 * 110.30094 * 44.01462 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 -0.0006 5 1 1.8821 2.3965 -1.2125 6 1 1.8823 2.3963 1.2126 7 6 2.0072 -1.2133 -0.0005 8 1 3.0872 -1.2134 -0.0010 9 6 1.2995 -2.4391 -0.0005 10 7 -0.0408 -2.4542 -0.0005 11 6 -0.6971 -3.6011 -0.0011 12 16 -2.4589 -3.5785 -0.0003 13 7 -0.0675 -4.7702 -0.0021 14 6 1.2555 -4.8379 -0.0021 15 6 1.9899 -3.6668 -0.0068 16 6 3.4664 -3.9846 -0.0141 17 6 3.5588 -5.4614 -0.4556 18 6 2.1910 -6.0259 -0.0027 19 1 -0.4849 0.8401 0.0004 20 1 -2.7043 -3.5744 -1.3888 21 1 3.9879 -3.3438 -0.7251 22 1 3.8853 -3.8598 0.9845 23 1 3.6782 -5.5359 -1.5365 24 1 4.3749 -5.9691 0.0585 25 1 2.2597 -6.4535 0.9976 26 1 1.8474 -6.7775 -0.7133 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064040.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:42 Heat of formation + Delta-G solvation = 16.775256 kcal Electronic energy + Delta-G solvation = -12788.424234 eV Core-core repulsion = 10571.010758 eV Total energy + Delta-G solvation = -2217.413476 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.26828 -37.28230 -35.95235 -33.40021 -30.86741 -28.69318 -28.03689 -24.23339 -23.17108 -21.46342 -19.51657 -18.63749 -17.83714 -16.85553 -16.47916 -16.05814 -14.98336 -14.80731 -14.38442 -13.99143 -13.67023 -13.09694 -13.01964 -12.84328 -12.81570 -12.12808 -11.91011 -11.89811 -11.83859 -11.51299 -10.86478 -10.52609 -9.65174 -9.52048 -9.07417 -8.42729 -6.78308 0.19839 0.67418 0.91262 1.39636 1.46752 1.56467 1.64447 2.17152 2.74083 3.44331 3.64938 3.90371 4.22052 4.27365 4.52239 4.54784 4.80259 4.96040 5.02437 5.10751 5.12628 5.28290 5.41866 5.46361 5.78608 6.00148 6.46370 6.68941 6.95178 7.87861 8.29908 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.012933 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.410292 B = 2164.530963 C = 3396.356313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.019 3.981 3 Si 0.994 3.006 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.434 4.434 8 H 0.103 0.897 9 C 0.232 3.768 10 N -0.501 5.501 11 C 0.270 3.730 12 S -0.067 6.067 13 N -0.594 5.594 14 C 0.120 3.880 15 C -0.301 4.301 16 C -0.049 4.049 17 C -0.102 4.102 18 C -0.056 4.056 19 H 0.286 0.714 20 H 0.103 0.897 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.110 0.890 25 H 0.094 0.906 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -3.208 -0.860 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.205 4.205 3 Si 0.813 3.187 4 H -0.170 1.170 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.121 0.879 9 C 0.101 3.899 10 N -0.224 5.224 11 C -0.112 4.112 12 S 0.086 5.914 13 N -0.319 5.319 14 C -0.022 4.022 15 C -0.309 4.309 16 C -0.088 4.088 17 C -0.140 4.140 18 C -0.094 4.094 19 H 0.097 0.903 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.128 0.872 25 H 0.113 0.887 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.619 -3.061 -0.622 4.780 hybrid contribution 1.451 0.813 -0.892 1.887 sum 5.069 -2.248 -1.514 5.748 Atomic orbital electron populations 1.70190 1.09178 1.30004 1.27027 1.27203 0.95800 1.05111 0.92365 0.84972 0.79598 0.75197 0.78901 1.16993 1.19077 1.19002 1.20133 0.95282 0.89420 1.41889 0.87864 1.19090 0.88013 0.93451 0.89346 1.70001 1.08713 1.25688 1.17980 1.24110 0.98953 0.87415 1.00680 1.85770 0.95297 1.97915 1.12422 1.67994 1.10487 1.28499 1.24958 1.22496 0.89555 0.97255 0.92886 1.22363 0.99267 0.94839 1.14448 1.20585 0.89891 0.97139 1.01160 1.22379 0.96001 0.93858 1.01732 1.21021 0.92196 0.93168 1.03029 0.90333 0.93285 0.91716 0.91041 0.90610 0.87184 0.88729 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.46 11.52 21.85 0.25 -39.20 15 2 C 0.02 0.95 5.50 85.31 0.47 1.42 15 3 Si 0.99 36.19 29.56 68.60 2.03 38.22 15 4 H -0.25 -8.43 7.11 99.48 0.71 -7.73 15 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 6 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 7 C -0.43 -22.63 9.09 23.54 0.21 -22.41 15 8 H 0.10 4.90 7.60 -2.91 -0.02 4.88 15 9 C 0.23 12.89 6.58 40.26 0.26 13.15 15 10 N -0.50 -29.08 8.01 -189.99 -1.52 -30.60 15 11 C 0.27 14.51 7.91 180.48 1.43 15.94 15 12 S -0.07 -2.99 26.15 -56.49 -1.48 -4.47 15 13 N -0.59 -30.58 10.38 -184.28 -1.91 -32.49 15 14 C 0.12 5.56 7.37 42.63 0.31 5.88 15 15 C -0.30 -14.48 6.10 -19.12 -0.12 -14.59 15 16 C -0.05 -1.77 6.34 30.44 0.19 -1.57 15 17 C -0.10 -2.78 7.10 31.67 0.22 -2.56 15 18 C -0.06 -1.83 6.78 30.61 0.21 -1.63 15 19 H 0.29 13.61 8.29 -92.71 -0.77 12.84 15 20 H 0.10 4.15 9.55 73.80 0.70 4.85 15 21 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.11 2.16 8.14 -2.39 -0.02 2.15 15 25 H 0.09 2.78 8.14 -2.39 -0.02 2.76 15 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -65.99 243.99 2.48 -63.51 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.92 Total: 11.41 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 3.20 Total: -6.38 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.18 Total: -102.30 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.48 Total: -4.47 kcal Total: -65.99 2.48 -63.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064040.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.284 kcal (2) G-P(sol) polarization free energy of solvation -65.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds