Wall clock time and date at job start Mon Mar 30 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48503 * 109.47380 * 239.99925 * 3 2 1 5 5 H 1.48499 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47099 * 119.99741 * 3 2 1 7 7 C 1.37878 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.38273 * 119.51564 * 269.97466 * 10 9 7 12 12 C 1.38427 * 119.15098 * 180.36561 * 11 10 9 13 13 C 1.37775 * 119.89097 * 359.84378 * 12 11 10 14 14 C 1.39914 * 122.05128 * 359.28647 * 13 12 11 15 15 C 1.37696 * 119.52086 * 90.00275 * 10 9 7 16 16 O 1.35830 * 116.68431 * 181.47169 * 14 13 12 17 17 C 1.43972 * 115.27630 * 337.89773 * 16 14 13 18 18 S 1.77707 * 132.47333 * 179.25976 * 13 12 11 19 19 H 0.96997 * 119.99860 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47215 * 59.99551 * 9 7 2 21 21 H 1.09005 * 109.46874 * 300.00085 * 9 7 2 22 22 H 1.07995 * 120.42319 * 0.39487 * 11 10 9 23 23 H 1.08004 * 120.05586 * 179.87207 * 12 11 10 24 24 H 1.08002 * 119.48788 * 0.02761 * 15 10 9 25 25 H 1.08995 * 111.20512 * 271.24737 * 17 16 14 26 26 H 1.08998 * 111.23695 * 146.90184 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6735 -4.1621 -1.2046 12 6 3.5672 -5.2193 -1.1956 13 6 4.0046 -5.7383 0.0033 14 6 3.5851 -5.2208 1.2337 15 6 2.6703 -4.1608 1.1969 16 8 4.1085 -5.7956 2.3475 17 6 4.6134 -7.1321 2.1702 18 16 5.1094 -7.0720 0.4018 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6240 -2.5574 0.8880 22 1 2.3273 -3.7466 -2.1394 23 1 3.9213 -5.6362 -2.1269 24 1 2.3078 -3.7389 2.1226 25 1 3.8321 -7.8739 2.3355 26 1 5.4726 -7.3183 2.8146 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261084632.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:14 Heat of formation + Delta-G solvation = -6.311242 kcal Electronic energy + Delta-G solvation = -12334.870558 eV Core-core repulsion = 10084.163226 eV Total energy + Delta-G solvation = -2250.707333 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.97741 -37.48038 -33.41890 -31.29047 -30.06320 -27.43499 -27.06658 -23.50263 -22.44563 -20.62786 -17.89232 -16.70321 -16.38654 -16.15516 -15.89035 -14.81707 -14.27488 -13.84606 -13.41026 -12.87425 -12.41902 -12.18668 -11.91922 -11.43457 -11.18433 -10.90837 -10.67405 -10.52149 -10.36350 -9.81079 -9.60860 -8.92706 -8.47910 -8.17777 -7.18384 -6.10087 -4.14877 1.24017 1.66111 1.75028 2.09385 3.07327 3.30122 3.34192 3.37604 4.10922 4.42508 4.75931 4.88458 4.94706 5.24777 5.59029 5.69800 5.83257 5.95210 6.29279 6.47231 6.72776 6.96129 7.01551 7.38633 7.50747 7.68238 7.84984 8.21721 8.89758 9.49563 10.99530 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.051168 B = 0.006512 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.084879 B = 4298.866033 C = 4396.544619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.047 3.953 10 C 0.003 3.997 11 C -0.130 4.130 12 C -0.054 4.054 13 C -0.163 4.163 14 C 0.087 3.913 15 C -0.119 4.119 16 O -0.302 6.302 17 C 0.106 3.894 18 S -0.198 6.198 19 H 0.264 0.736 20 H 0.035 0.965 21 H 0.033 0.967 22 H 0.135 0.865 23 H 0.124 0.876 24 H 0.131 0.869 25 H 0.097 0.903 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -12.063 1.494 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.011 3.989 10 C 0.001 3.999 11 C -0.149 4.149 12 C -0.077 4.077 13 C -0.275 4.275 14 C 0.038 3.962 15 C -0.139 4.139 16 O -0.216 6.216 17 C -0.080 4.080 18 S 0.038 5.962 19 H 0.073 0.927 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.153 0.847 23 H 0.142 0.858 24 H 0.149 0.851 25 H 0.115 0.885 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.231 -12.631 1.075 14.594 hybrid contribution -0.213 1.401 0.546 1.519 sum 7.018 -11.230 1.622 13.341 Atomic orbital electron populations 1.69936 1.06045 1.27115 1.50039 1.24992 0.94895 0.99294 0.94953 0.86568 0.79530 0.82616 0.78834 1.20077 1.21186 1.20096 1.20984 0.93096 0.89639 1.51712 0.92348 1.18437 0.92392 0.89146 0.98959 1.20486 0.94836 0.93852 0.90714 1.21132 0.98746 0.96162 0.98910 1.20064 0.96586 0.96352 0.94698 1.21927 1.05542 1.03587 0.96485 1.19935 0.95924 0.96985 0.83377 1.20456 0.97009 0.96612 0.99853 1.86233 1.75075 1.27518 1.32788 1.25952 1.01987 0.85210 0.94836 1.86408 1.53317 1.45060 1.11382 0.92656 0.94631 0.94887 0.84710 0.85764 0.85133 0.88508 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -25.00 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.52 -14.07 9.09 -34.44 -0.31 -14.39 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.05 1.17 5.07 -29.04 -0.15 1.03 15 10 C 0.00 0.06 5.05 -104.81 -0.53 -0.47 15 11 C -0.13 -2.42 9.73 -39.50 -0.38 -2.80 15 12 C -0.05 -0.92 10.04 -39.68 -0.40 -1.32 15 13 C -0.16 -2.87 6.62 -39.12 -0.26 -3.13 15 14 C 0.09 1.61 6.86 -38.27 -0.26 1.35 15 15 C -0.12 -2.39 9.66 -39.09 -0.38 -2.77 15 16 O -0.30 -4.97 10.68 -19.21 -0.21 -5.18 15 17 C 0.11 1.27 8.65 101.05 0.87 2.15 15 18 S -0.20 -2.90 23.38 -107.50 -2.51 -5.42 15 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 20 H 0.04 0.91 8.08 -51.93 -0.42 0.49 15 21 H 0.03 0.85 8.07 -51.93 -0.42 0.43 15 22 H 0.14 2.34 8.06 -52.49 -0.42 1.92 15 23 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 24 H 0.13 2.57 8.06 -52.49 -0.42 2.14 15 25 H 0.10 0.96 8.14 -51.93 -0.42 0.53 15 26 H 0.13 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 247.09 15.07 3.72 3.72 Total: -1.00 -29.49 247.09 -7.67 -37.15 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -2.49 Total: -2.68 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.89 Total: -18.78 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.74 Total: -25.00 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.21 Total: -5.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.51 Total: -5.42 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.49 -7.67 -37.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084632.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.842 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds