Wall clock time and date at job start Mon Mar 30 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48503 * 109.47380 * 239.99925 * 3 2 1 5 5 H 1.48499 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47099 * 119.99741 * 3 2 1 7 7 C 1.37878 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.38273 * 119.51564 * 269.97466 * 10 9 7 12 12 C 1.38427 * 119.15098 * 180.36561 * 11 10 9 13 13 C 1.37775 * 119.89097 * 359.84378 * 12 11 10 14 14 C 1.39914 * 122.05128 * 359.28647 * 13 12 11 15 15 C 1.37696 * 119.52086 * 90.00275 * 10 9 7 16 16 O 1.35830 * 116.68431 * 181.47169 * 14 13 12 17 17 C 1.43972 * 115.27630 * 337.89773 * 16 14 13 18 18 S 1.77707 * 132.47333 * 179.25976 * 13 12 11 19 19 H 0.96997 * 119.99860 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47215 * 59.99551 * 9 7 2 21 21 H 1.09005 * 109.46874 * 300.00085 * 9 7 2 22 22 H 1.07995 * 120.42319 * 0.39487 * 11 10 9 23 23 H 1.08004 * 120.05586 * 179.87207 * 12 11 10 24 24 H 1.08002 * 119.48788 * 0.02761 * 15 10 9 25 25 H 1.08995 * 111.20512 * 271.24737 * 17 16 14 26 26 H 1.08998 * 111.23695 * 146.90184 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6735 -4.1621 -1.2046 12 6 3.5672 -5.2193 -1.1956 13 6 4.0046 -5.7383 0.0033 14 6 3.5851 -5.2208 1.2337 15 6 2.6703 -4.1608 1.1969 16 8 4.1085 -5.7956 2.3475 17 6 4.6134 -7.1321 2.1702 18 16 5.1094 -7.0720 0.4018 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6240 -2.5574 0.8880 22 1 2.3273 -3.7466 -2.1394 23 1 3.9213 -5.6362 -2.1269 24 1 2.3078 -3.7389 2.1226 25 1 3.8321 -7.8739 2.3355 26 1 5.4726 -7.3183 2.8146 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261084632.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:14 Heat of formation + Delta-G solvation = -23.380673 kcal Electronic energy + Delta-G solvation = -12335.610744 eV Core-core repulsion = 10084.163226 eV Total energy + Delta-G solvation = -2251.447519 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.31814 -38.89130 -35.37576 -33.03947 -31.46443 -29.05727 -28.35363 -25.38996 -23.88256 -22.17736 -19.22756 -18.49902 -17.99433 -17.35568 -17.21744 -16.62257 -15.74968 -15.22869 -14.77823 -14.57010 -13.99003 -13.80788 -13.29366 -13.24554 -12.72776 -12.64636 -12.47075 -12.17000 -11.78420 -11.58749 -11.35174 -10.60100 -10.48526 -9.59373 -8.48135 -8.17910 -6.33752 0.02082 0.28791 0.33696 0.86446 1.41820 1.43722 1.52014 1.88528 2.38770 2.67249 3.11054 3.55041 3.94042 4.07619 4.16444 4.27789 4.34410 4.46466 4.81771 5.02700 5.21708 5.27849 5.32716 5.54353 5.72847 5.90428 6.03136 6.16280 6.77789 7.34840 8.88413 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.051168 B = 0.006512 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.084879 B = 4298.866033 C = 4396.544619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.056 3.944 10 C -0.021 4.021 11 C -0.133 4.133 12 C -0.046 4.046 13 C -0.172 4.172 14 C 0.086 3.914 15 C -0.136 4.136 16 O -0.314 6.314 17 C 0.104 3.896 18 S -0.185 6.185 19 H 0.267 0.733 20 H 0.018 0.982 21 H 0.008 0.992 22 H 0.143 0.857 23 H 0.157 0.843 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.393 -13.222 1.495 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.022 4.022 11 C -0.153 4.153 12 C -0.068 4.068 13 C -0.284 4.284 14 C 0.036 3.964 15 C -0.156 4.156 16 O -0.229 6.229 17 C -0.080 4.080 18 S 0.051 5.949 19 H 0.075 0.925 20 H 0.037 0.963 21 H 0.027 0.973 22 H 0.161 0.839 23 H 0.174 0.826 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.168 -13.814 1.080 16.614 hybrid contribution -0.752 1.596 0.615 1.868 sum 8.416 -12.218 1.696 14.933 Atomic orbital electron populations 1.70052 1.07550 1.28107 1.50948 1.25855 0.95732 1.02905 0.94468 0.85529 0.78332 0.78264 0.79124 1.19146 1.20539 1.19586 1.21305 0.93108 0.91085 1.51483 0.92733 1.18168 0.92701 0.90348 0.96845 1.20149 0.95672 0.94003 0.92398 1.21210 0.99143 0.96751 0.98196 1.20338 0.95303 0.95184 0.96005 1.22301 1.05584 1.04338 0.96217 1.19885 0.95388 0.96550 0.84535 1.20337 0.98323 0.97840 0.99100 1.86199 1.74837 1.29704 1.32149 1.26522 1.04240 0.83597 0.93648 1.86348 1.52138 1.43078 1.13305 0.92462 0.96343 0.97338 0.83941 0.82568 0.86136 0.85794 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.44 15 2 C 0.01 0.51 5.46 84.66 0.46 0.97 15 3 Si 0.96 43.72 29.54 68.60 2.03 45.75 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 7 C -0.53 -29.80 9.09 25.60 0.23 -29.57 15 8 H 0.05 3.02 7.74 -2.92 -0.02 3.00 15 9 C 0.06 2.92 5.07 29.10 0.15 3.07 15 10 C -0.02 -0.89 5.05 -19.99 -0.10 -0.99 15 11 C -0.13 -4.95 9.73 22.32 0.22 -4.73 15 12 C -0.05 -1.47 10.04 22.21 0.22 -1.24 15 13 C -0.17 -5.70 6.62 22.57 0.15 -5.55 15 14 C 0.09 3.11 6.86 23.12 0.16 3.27 15 15 C -0.14 -5.57 9.66 22.59 0.22 -5.35 15 16 O -0.31 -9.68 10.68 -91.64 -0.98 -10.66 15 17 C 0.10 2.10 8.65 113.37 0.98 3.08 15 18 S -0.19 -4.81 23.38 -56.49 -1.32 -6.14 15 19 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 20 H 0.02 0.99 8.08 -2.39 -0.02 0.97 15 21 H 0.01 0.46 8.07 -2.38 -0.02 0.44 15 22 H 0.14 4.94 8.06 -2.91 -0.02 4.92 15 23 H 0.16 3.95 8.06 -2.91 -0.02 3.93 15 24 H 0.12 5.00 8.06 -2.91 -0.02 4.97 15 25 H 0.12 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.17 2.17 8.14 -2.39 -0.02 2.15 15 Total: -1.00 -63.98 247.09 3.88 -60.10 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 1.18 Total: 2.43 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 2.69 Total: -37.04 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.28 Total: -54.44 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.98 Total: -10.66 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -1.32 Total: -6.14 kcal Total: -63.98 3.88 -60.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084632.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.719 kcal (2) G-P(sol) polarization free energy of solvation -63.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds