Wall clock time and date at job start Mon Mar 30 2020 02:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86803 * 119.99841 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 299.99533 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99784 * 3 2 1 7 7 C 1.40131 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99712 * 179.97438 * 7 2 1 9 9 C 1.39438 * 119.99973 * 0.28165 * 7 2 1 10 10 C 1.39894 * 126.76756 * 179.43790 * 9 7 2 11 11 N 1.32587 * 107.36782 * 179.82661 * 10 9 7 12 12 C 1.32332 * 109.22152 * 0.43541 * 11 10 9 13 13 C 1.46198 * 125.31718 * 179.72082 * 12 11 10 14 14 C 1.37193 * 126.19955 * 359.71414 * 13 12 11 15 15 N 1.30983 * 113.81558 * 179.78576 * 14 13 12 16 16 C 1.29343 * 117.49782 * 0.52648 * 15 14 13 17 17 S 1.70908 * 110.67878 * 359.70530 * 16 15 14 18 18 O 1.34746 * 109.35821 * 359.72097 * 12 11 10 19 19 H 0.96996 * 120.00427 * 0.02562 * 1 2 3 20 20 H 1.08007 * 126.31498 * 359.94873 * 10 9 7 21 21 H 1.08000 * 123.08874 * 359.97438 * 14 13 12 22 22 H 1.08003 * 124.65986 * 179.72196 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0090 -1.2135 0.0005 8 1 3.0891 -1.2135 0.0001 9 6 1.3119 -2.4211 -0.0049 10 6 1.8638 -3.7066 -0.0161 11 7 0.8571 -4.5695 -0.0140 12 6 -0.2869 -3.9043 -0.0116 13 6 -1.6171 -4.5108 -0.0146 14 6 -1.8952 -5.8542 -0.0259 15 7 -3.1757 -6.1294 -0.0216 16 6 -4.0006 -5.1331 -0.0183 17 16 -3.1539 -3.6485 -0.0123 18 8 -0.0340 -2.5808 -0.0060 19 1 -0.4850 0.8400 -0.0004 20 1 2.9158 -3.9510 -0.0230 21 1 -1.1286 -6.6149 -0.0342 22 1 -5.0766 -5.2265 -0.0190 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261210223.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:28 Heat of formation + Delta-G solvation = 23.426996 kcal Electronic energy + Delta-G solvation = -12187.160689 eV Core-core repulsion = 9834.202559 eV Total energy + Delta-G solvation = -2352.958129 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.97155 -40.27931 -36.03663 -34.85840 -32.68586 -30.61576 -27.49003 -25.88801 -23.15637 -22.72854 -20.64266 -19.64021 -19.28759 -17.47981 -16.81115 -16.74325 -16.06695 -15.30101 -15.18001 -14.79303 -14.32404 -13.92147 -13.28112 -13.12052 -12.91925 -12.45386 -12.01093 -11.97277 -11.51722 -11.06422 -10.80478 -10.68559 -10.02775 -9.20439 -9.00613 -6.65319 -0.53163 0.33990 0.87306 0.99834 1.37427 1.55107 1.58332 1.86270 2.09334 2.37744 2.52764 2.97896 3.53341 3.79744 4.35716 4.52002 4.71957 4.83235 4.93866 5.24920 5.42880 5.89644 6.01218 6.28374 6.38401 6.75119 7.41621 7.99910 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.048277 B = 0.008219 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.850911 B = 3406.115935 C = 3976.117646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.015 3.985 3 Si 1.016 2.984 4 H -0.241 1.241 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.136 0.864 9 C 0.148 3.852 10 C -0.221 4.221 11 N -0.430 5.430 12 C 0.030 3.970 13 C -0.120 4.120 14 C 0.018 3.982 15 N -0.476 5.476 16 C -0.005 4.005 17 S 0.165 5.835 18 O -0.204 6.204 19 H 0.303 0.697 20 H 0.180 0.820 21 H 0.176 0.824 22 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 2.205 -0.024 4.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.206 4.206 3 Si 0.833 3.167 4 H -0.164 1.164 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.451 4.451 8 H 0.154 0.846 9 C 0.092 3.908 10 C -0.374 4.374 11 N -0.158 5.158 12 C -0.162 4.162 13 C -0.242 4.242 14 C -0.136 4.136 15 N -0.189 5.189 16 C -0.300 4.300 17 S 0.418 5.582 18 O -0.094 6.094 19 H 0.114 0.886 20 H 0.198 0.802 21 H 0.193 0.807 22 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.999 2.092 -0.019 5.419 hybrid contribution 1.026 0.496 0.001 1.140 sum -3.973 2.588 -0.018 4.742 Atomic orbital electron populations 1.69844 1.09778 1.32617 1.29091 1.27490 0.95952 1.06315 0.90842 0.84625 0.79494 0.73269 0.79283 1.16354 1.18582 1.18562 1.19551 0.96389 0.87433 1.41700 0.84640 1.21366 0.79194 0.97003 0.93273 1.23405 0.98579 0.87939 1.27449 1.69549 0.98023 1.35988 1.12281 1.21373 0.92386 0.78889 1.23547 1.23091 0.92959 0.96655 1.11486 1.22177 0.92696 0.92633 1.06130 1.66064 1.01930 1.34978 1.15894 1.29028 1.05771 0.89733 1.05510 1.83967 0.95032 1.11777 1.67456 1.84860 1.25034 1.24906 1.74617 0.88551 0.80242 0.80722 0.74049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.94 12.04 21.87 0.26 -38.67 14 2 C 0.01 0.67 5.50 85.30 0.47 1.14 14 3 Si 1.02 32.77 29.56 68.60 2.03 34.80 14 4 H -0.24 -7.21 7.11 99.48 0.71 -6.50 14 5 H -0.26 -8.14 7.11 99.48 0.71 -7.43 14 6 H -0.26 -8.13 7.11 99.48 0.71 -7.42 14 7 C -0.42 -20.79 9.33 23.02 0.21 -20.58 14 8 H 0.14 5.86 7.85 -2.91 -0.02 5.83 14 9 C 0.15 8.09 6.82 22.96 0.16 8.25 14 10 C -0.22 -11.52 11.97 84.98 1.02 -10.50 14 11 N -0.43 -23.17 11.19 -301.92 -3.38 -26.54 14 12 C 0.03 1.63 8.08 86.69 0.70 2.33 14 13 C -0.12 -5.45 6.53 24.09 0.16 -5.29 14 14 C 0.02 0.74 11.36 84.57 0.96 1.71 14 15 N -0.48 -17.11 10.50 -201.45 -2.11 -19.22 14 16 C -0.01 -0.15 12.20 130.61 1.59 1.44 14 17 S 0.16 5.90 23.20 -56.49 -1.31 4.59 14 18 O -0.20 -11.69 9.18 -19.52 -0.18 -11.87 14 19 H 0.30 13.11 8.30 -92.71 -0.77 12.34 14 20 H 0.18 8.14 8.06 -2.91 -0.02 8.12 14 21 H 0.18 7.04 8.06 -2.91 -0.02 7.02 14 22 H 0.24 4.41 8.06 -2.91 -0.02 4.39 14 Total: -1.00 -63.91 229.10 1.84 -62.08 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.26 Total: 16.35 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 5.27 Total: -21.51 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -5.23 Total: -84.44 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.18 Total: -11.87 kcal Atomic # 14 Polarization: 32.77 SS G_CDS: 2.03 Total: 34.80 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.31 Total: 4.59 kcal Total: -63.91 1.84 -62.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210223.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.504 kcal (2) G-P(sol) polarization free energy of solvation -63.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds