Wall clock time and date at job start Mon Mar 30 2020 03:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34021 * 125.77597 * 2 1 4 4 C 1.32289 * 109.22929 * 179.97438 * 3 2 1 5 5 S 1.76232 * 141.35312 * 180.02562 * 4 3 2 6 6 C 1.75774 * 90.88168 * 179.80918 * 5 4 3 7 7 C 1.40279 * 125.37813 * 180.19762 * 6 5 4 8 8 H 1.08004 * 120.00301 * 180.15026 * 7 6 5 9 9 C 1.39929 * 120.00080 * 0.15309 * 7 6 5 10 10 N 1.30920 * 119.99796 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00159 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47096 * 89.99770 * 11 9 7 13 13 H 1.48505 * 109.47217 * 209.99820 * 11 9 7 14 14 H 1.48507 * 109.47306 * 329.99905 * 11 9 7 15 15 C 1.36193 * 109.24839 * 0.32946 * 6 5 4 16 16 N 1.35340 * 108.74887 * 0.02562 * 4 3 2 17 17 C 1.34179 * 125.77381 * 179.97438 * 2 1 3 18 18 C 1.50693 * 126.46628 * 0.03945 * 17 2 1 19 19 H 1.08994 * 109.47092 * 270.02283 * 1 2 3 20 20 H 1.09010 * 109.47153 * 30.02468 * 1 2 3 21 21 H 1.09002 * 109.47193 * 150.02040 * 1 2 3 22 22 H 0.97002 * 119.99965 * 180.02562 * 10 9 7 23 23 H 1.08002 * 122.30613 * 179.87115 * 15 6 5 24 24 H 1.09003 * 109.47308 * 269.97082 * 18 17 2 25 25 H 1.08997 * 109.47128 * 29.98197 * 18 17 2 26 26 H 1.09002 * 109.46899 * 149.97862 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0873 0.0000 4 6 3.5586 0.7106 0.0006 5 16 5.1914 1.3736 0.0015 6 6 5.8777 -0.2446 0.0074 7 6 7.2478 -0.5457 0.0146 8 1 7.5745 -1.5752 0.0154 9 6 8.1913 0.4876 0.0209 10 7 7.7953 1.7355 0.0195 11 14 10.0157 0.0867 0.0312 12 1 10.5073 -0.0186 -1.3661 13 1 10.7554 1.1642 0.7363 14 1 10.2349 -1.2044 0.7316 15 6 4.8693 -1.1600 0.0009 16 7 3.6106 -0.6418 0.0004 17 6 2.2914 -1.0886 0.0005 18 6 1.8317 -2.5237 0.0003 19 1 -0.3633 0.0004 1.0276 20 1 -0.3634 0.8898 -0.5143 21 1 -0.3634 -0.8902 -0.5135 22 1 8.4493 2.4519 0.0234 23 1 5.0555 -2.2239 0.0009 24 1 1.7208 -2.8699 1.0279 25 1 0.8735 -2.5983 -0.5138 26 1 2.5686 -3.1412 -0.5134 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261210227.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:51 Heat of formation + Delta-G solvation = 53.208508 kcal Electronic energy + Delta-G solvation = -12557.179458 eV Core-core repulsion = 10341.345846 eV Total energy + Delta-G solvation = -2215.833612 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.09514 -35.50830 -33.92611 -31.53542 -30.28405 -28.04839 -25.62792 -24.10824 -22.11430 -19.57501 -18.62380 -17.38442 -16.09427 -15.40643 -14.87522 -14.38429 -13.45114 -13.19874 -12.64690 -12.44382 -12.37177 -12.24136 -11.69143 -11.67590 -11.53370 -11.48418 -10.80027 -10.61431 -10.46921 -9.64538 -9.47742 -8.88098 -8.69694 -7.54355 -7.29395 -6.23569 -4.81534 2.37608 2.66585 2.83505 2.87950 2.90720 3.42690 3.56499 3.60734 3.96092 4.20573 4.69845 5.60336 5.74617 5.78521 5.95010 6.01883 6.22338 6.28087 6.35203 6.44991 6.65991 6.81693 7.02927 7.57888 7.65303 7.80965 7.98096 8.24981 8.53384 9.09788 9.64309 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.062986 B = 0.008109 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.434477 B = 3452.196508 C = 3876.167185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.011 3.989 3 N -0.496 5.496 4 C 0.061 3.939 5 S 0.223 5.777 6 C 0.038 3.962 7 C -0.394 4.394 8 H 0.101 0.899 9 C 0.058 3.942 10 N -0.793 5.793 11 Si 0.943 3.057 12 H -0.263 1.263 13 H -0.271 1.271 14 H -0.257 1.257 15 C -0.240 4.240 16 N -0.328 5.328 17 C -0.087 4.087 18 C -0.056 4.056 19 H 0.058 0.942 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.304 0.696 23 H 0.142 0.858 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -3.326 -0.044 3.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.125 4.125 3 N -0.220 5.220 4 C -0.302 4.302 5 S 0.468 5.532 6 C -0.083 4.083 7 C -0.428 4.428 8 H 0.119 0.881 9 C -0.161 4.161 10 N -0.421 5.421 11 Si 0.766 3.234 12 H -0.188 1.188 13 H -0.196 1.196 14 H -0.181 1.181 15 C -0.365 4.365 16 N 0.002 4.998 17 C -0.205 4.205 18 C -0.114 4.114 19 H 0.077 0.923 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.117 0.883 23 H 0.160 0.840 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.935 -1.080 -0.043 1.429 hybrid contribution 0.552 -2.424 0.017 2.486 sum -0.383 -3.504 -0.026 3.525 Atomic orbital electron populations 1.19876 0.88592 1.01527 1.01147 1.20080 0.95413 0.88335 1.08655 1.70242 0.97576 1.29158 1.25061 1.28023 1.02313 0.85429 1.14457 1.85583 0.81808 1.04582 1.81218 1.21114 0.96298 0.93173 0.97687 1.18961 0.87660 0.95475 1.40709 0.88121 1.26203 1.04002 0.93949 0.91989 1.68403 1.38247 1.00600 1.34823 0.85681 0.78253 0.79729 0.79718 1.18804 1.19556 1.18081 1.19873 0.79896 0.98280 1.38498 1.42753 1.04724 1.07454 1.44909 1.20594 0.81348 0.96539 1.22048 1.19912 1.00311 0.90119 1.01045 0.92312 0.91917 0.92158 0.88270 0.84023 0.92597 0.91305 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.90 10.20 36.01 0.37 -0.53 15 2 C 0.01 0.26 7.06 -83.07 -0.59 -0.33 15 3 N -0.50 -12.93 11.32 -9.75 -0.11 -13.04 15 4 C 0.06 1.63 8.89 -88.59 -0.79 0.85 15 5 S 0.22 5.67 20.30 -107.50 -2.18 3.49 15 6 C 0.04 0.97 6.13 -39.55 -0.24 0.73 15 7 C -0.39 -9.46 9.29 -38.18 -0.35 -9.82 15 8 H 0.10 2.25 7.85 -52.48 -0.41 1.84 15 9 C 0.06 1.29 5.50 -17.31 -0.10 1.20 15 10 N -0.79 -18.32 10.66 55.55 0.59 -17.73 15 11 Si 0.94 16.58 29.56 -169.99 -5.02 11.55 15 12 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 13 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 14 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 15 C -0.24 -6.08 11.31 -16.38 -0.19 -6.27 15 16 N -0.33 -8.44 3.13 -58.57 -0.18 -8.63 15 17 C -0.09 -1.98 7.24 -80.63 -0.58 -2.56 15 18 C -0.06 -0.96 10.21 36.00 0.37 -0.60 15 19 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 20 H 0.06 1.01 8.14 -51.92 -0.42 0.59 15 21 H 0.06 0.85 7.12 -51.93 -0.37 0.48 15 22 H 0.30 6.27 8.30 -40.82 -0.34 5.93 15 23 H 0.14 3.32 8.06 -52.49 -0.42 2.90 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.07 0.99 7.12 -51.93 -0.37 0.62 15 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 LS Contribution 243.12 15.07 3.66 3.66 Total: -1.00 -28.98 243.12 -7.74 -36.72 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.40 Total: 1.30 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.10 Total: -17.33 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.30 Total: -39.39 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -5.02 Total: 11.55 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -2.18 Total: 3.49 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.98 -7.74 -36.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210227.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.929 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds