Wall clock time and date at job start Mon Mar 30 2020 03:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34021 * 125.77597 * 2 1 4 4 C 1.32289 * 109.22929 * 179.97438 * 3 2 1 5 5 S 1.76232 * 141.35312 * 180.02562 * 4 3 2 6 6 C 1.75774 * 90.88168 * 179.80918 * 5 4 3 7 7 C 1.40279 * 125.37813 * 180.19762 * 6 5 4 8 8 H 1.08004 * 120.00301 * 180.15026 * 7 6 5 9 9 C 1.39929 * 120.00080 * 0.15309 * 7 6 5 10 10 N 1.30920 * 119.99796 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00159 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47096 * 89.99770 * 11 9 7 13 13 H 1.48505 * 109.47217 * 209.99820 * 11 9 7 14 14 H 1.48507 * 109.47306 * 329.99905 * 11 9 7 15 15 C 1.36193 * 109.24839 * 0.32946 * 6 5 4 16 16 N 1.35340 * 108.74887 * 0.02562 * 4 3 2 17 17 C 1.34179 * 125.77381 * 179.97438 * 2 1 3 18 18 C 1.50693 * 126.46628 * 0.03945 * 17 2 1 19 19 H 1.08994 * 109.47092 * 270.02283 * 1 2 3 20 20 H 1.09010 * 109.47153 * 30.02468 * 1 2 3 21 21 H 1.09002 * 109.47193 * 150.02040 * 1 2 3 22 22 H 0.97002 * 119.99965 * 180.02562 * 10 9 7 23 23 H 1.08002 * 122.30613 * 179.87115 * 15 6 5 24 24 H 1.09003 * 109.47308 * 269.97082 * 18 17 2 25 25 H 1.08997 * 109.47128 * 29.98197 * 18 17 2 26 26 H 1.09002 * 109.46899 * 149.97862 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0873 0.0000 4 6 3.5586 0.7106 0.0006 5 16 5.1914 1.3736 0.0015 6 6 5.8777 -0.2446 0.0074 7 6 7.2478 -0.5457 0.0146 8 1 7.5745 -1.5752 0.0154 9 6 8.1913 0.4876 0.0209 10 7 7.7953 1.7355 0.0195 11 14 10.0157 0.0867 0.0312 12 1 10.5073 -0.0186 -1.3661 13 1 10.7554 1.1642 0.7363 14 1 10.2349 -1.2044 0.7316 15 6 4.8693 -1.1600 0.0009 16 7 3.6106 -0.6418 0.0004 17 6 2.2914 -1.0886 0.0005 18 6 1.8317 -2.5237 0.0003 19 1 -0.3633 0.0004 1.0276 20 1 -0.3634 0.8898 -0.5143 21 1 -0.3634 -0.8902 -0.5135 22 1 8.4493 2.4519 0.0234 23 1 5.0555 -2.2239 0.0009 24 1 1.7208 -2.8699 1.0279 25 1 0.8735 -2.5983 -0.5138 26 1 2.5686 -3.1412 -0.5134 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261210227.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:51 Heat of formation + Delta-G solvation = 37.138835 kcal Electronic energy + Delta-G solvation = -12557.876291 eV Core-core repulsion = 10341.345846 eV Total energy + Delta-G solvation = -2216.530445 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.91492 -37.32232 -35.70021 -33.16155 -32.03385 -29.59852 -27.35891 -25.82875 -23.96123 -21.33243 -20.44434 -19.21290 -17.93175 -17.06142 -16.68184 -16.13425 -15.02066 -14.91619 -14.11701 -14.05523 -13.81026 -13.69377 -13.32145 -13.21892 -13.10259 -12.83339 -12.62251 -12.12252 -12.01101 -11.41361 -11.39234 -10.74117 -10.54408 -9.37253 -9.01898 -8.12898 -6.68677 0.59121 0.77314 1.37403 1.39733 1.54509 1.57992 1.82641 2.10359 2.14356 2.44178 2.89400 3.98959 4.17468 4.38148 4.40557 4.71677 4.79966 4.90695 4.92463 4.95838 5.10721 5.13629 5.25246 5.80287 5.83236 6.07294 6.14020 6.43561 6.68734 7.26643 7.94656 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.062986 B = 0.008109 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.434477 B = 3452.196508 C = 3876.167185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.005 4.005 3 N -0.524 5.524 4 C 0.021 3.979 5 S 0.203 5.797 6 C 0.019 3.981 7 C -0.412 4.412 8 H 0.114 0.886 9 C 0.022 3.978 10 N -0.814 5.814 11 Si 1.020 2.980 12 H -0.257 1.257 13 H -0.262 1.262 14 H -0.250 1.250 15 C -0.267 4.267 16 N -0.338 5.338 17 C -0.099 4.099 18 C -0.052 4.052 19 H 0.076 0.924 20 H 0.065 0.935 21 H 0.093 0.907 22 H 0.316 0.684 23 H 0.153 0.847 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -4.556 -0.035 4.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 N -0.250 5.250 4 C -0.342 4.342 5 S 0.447 5.553 6 C -0.102 4.102 7 C -0.446 4.446 8 H 0.132 0.868 9 C -0.196 4.196 10 N -0.441 5.441 11 Si 0.838 3.162 12 H -0.181 1.181 13 H -0.186 1.186 14 H -0.174 1.174 15 C -0.392 4.392 16 N -0.010 5.010 17 C -0.216 4.216 18 C -0.110 4.110 19 H 0.094 0.906 20 H 0.084 0.916 21 H 0.111 0.889 22 H 0.130 0.870 23 H 0.171 0.829 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.628 -2.312 -0.034 2.396 hybrid contribution 0.422 -2.007 0.017 2.051 sum -0.206 -4.319 -0.018 4.323 Atomic orbital electron populations 1.20048 0.84490 1.03321 1.02814 1.21108 0.97979 0.87416 1.07522 1.70215 0.97857 1.31016 1.25886 1.28208 1.02788 0.86418 1.16751 1.85353 0.82346 1.05480 1.82083 1.21494 0.97372 0.93048 0.98253 1.19433 0.87531 0.96855 1.40746 0.86808 1.27284 1.08590 0.93236 0.90457 1.68423 1.40299 1.01785 1.33625 0.84578 0.71750 0.79864 0.80027 1.18082 1.18588 1.17368 1.20054 0.80073 0.98755 1.40326 1.43032 1.05724 1.07277 1.44918 1.21660 0.80255 0.99296 1.20435 1.20083 1.01753 0.86526 1.02593 0.90575 0.91629 0.88868 0.87028 0.82924 0.90983 0.87855 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.52 10.20 71.24 0.73 -0.79 15 2 C 0.00 -0.21 7.06 41.30 0.29 0.08 15 3 N -0.52 -27.79 11.32 -184.76 -2.09 -29.89 15 4 C 0.02 1.14 8.89 179.64 1.60 2.73 15 5 S 0.20 10.71 20.30 -56.49 -1.15 9.57 15 6 C 0.02 0.99 6.13 22.29 0.14 1.12 15 7 C -0.41 -19.82 9.29 23.18 0.22 -19.60 15 8 H 0.11 5.02 7.85 -2.91 -0.02 5.00 15 9 C 0.02 0.94 5.50 85.24 0.47 1.41 15 10 N -0.81 -37.49 10.66 21.83 0.23 -37.26 15 11 Si 1.02 32.31 29.56 68.60 2.03 34.34 15 12 H -0.26 -7.86 7.11 99.48 0.71 -7.15 15 13 H -0.26 -7.88 7.11 99.48 0.71 -7.17 15 14 H -0.25 -7.64 7.11 99.48 0.71 -6.93 15 15 C -0.27 -13.84 11.31 83.55 0.95 -12.90 15 16 N -0.34 -17.69 3.13 -339.21 -1.06 -18.75 15 17 C -0.10 -4.42 7.24 40.44 0.29 -4.13 15 18 C -0.05 -1.66 10.21 71.23 0.73 -0.93 15 19 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 20 H 0.06 1.98 8.14 -2.38 -0.02 1.96 15 21 H 0.09 2.25 7.12 -2.39 -0.02 2.23 15 22 H 0.32 12.80 8.30 -92.71 -0.77 12.03 15 23 H 0.15 7.26 8.06 -2.91 -0.02 7.24 15 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.10 2.56 7.12 -2.39 -0.02 2.54 15 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 Total: -1.00 -63.94 243.12 4.55 -59.39 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.19 Total: 15.59 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 5.40 Total: -33.00 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -2.92 Total: -85.89 kcal Atomic # 14 Polarization: 32.31 SS G_CDS: 2.03 Total: 34.34 kcal Atomic # 16 Polarization: 10.71 SS G_CDS: -1.15 Total: 9.57 kcal Total: -63.94 4.55 -59.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210227.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.527 kcal (2) G-P(sol) polarization free energy of solvation -63.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds