Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86804 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47356 * 274.97749 * 3 2 1 5 5 H 1.48492 * 109.47070 * 34.98161 * 3 2 1 6 6 H 1.48503 * 109.46700 * 154.98028 * 3 2 1 7 7 C 1.39838 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00167 * 186.01331 * 7 2 1 9 9 C 1.41446 * 119.99606 * 6.01521 * 7 2 1 10 10 N 1.33260 * 125.84598 * 354.20062 * 9 7 2 11 11 N 1.40074 * 108.74723 * 180.02562 * 10 9 7 12 12 C 1.36405 * 131.98959 * 180.02562 * 11 10 9 13 13 C 1.35058 * 120.74354 * 179.97438 * 12 11 10 14 14 C 1.40474 * 120.47269 * 0.04573 * 13 12 11 15 15 C 1.36045 * 119.58784 * 359.95524 * 14 13 12 16 16 C 1.37447 * 107.94472 * 0.02562 * 11 10 9 17 17 C 1.38459 * 107.56789 * 0.02562 * 16 11 10 18 18 Cl 1.73598 * 126.28444 * 179.97438 * 17 16 11 19 19 H 0.97001 * 120.00183 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.62655 * 359.97391 * 12 11 10 21 21 H 1.08004 * 119.76133 * 179.97438 * 13 12 11 22 22 H 1.08006 * 120.20540 * 179.97438 * 14 13 12 23 23 H 1.07998 * 120.38396 * 180.29849 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3852 2.1073 -1.3948 5 1 1.4970 2.6200 0.8026 6 1 3.5892 1.4120 0.5922 7 6 2.0081 -1.2110 0.0005 8 1 3.0837 -1.2136 0.0985 9 6 1.3067 -2.4326 -0.1273 10 7 -0.0183 -2.5734 -0.1458 11 7 -0.3246 -3.9331 -0.2860 12 6 -1.5135 -4.5979 -0.3583 13 6 -1.5462 -5.9410 -0.4964 14 6 -0.3530 -6.6791 -0.5673 15 6 0.8419 -6.0326 -0.4969 16 6 0.8587 -4.6290 -0.3531 17 6 1.8900 -3.7104 -0.2548 18 17 3.5889 -4.0660 -0.2844 19 1 -0.4850 0.8400 -0.0004 20 1 -2.4391 -4.0440 -0.3044 21 1 -2.4964 -6.4513 -0.5515 22 1 -0.3842 -7.7531 -0.6773 23 1 1.7670 -6.5868 -0.5549 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214268.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = 64.152464 kcal Electronic energy + Delta-G solvation = -12377.595078 eV Core-core repulsion = 10024.359231 eV Total energy + Delta-G solvation = -2353.235847 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.14150 -37.83537 -36.85961 -35.22552 -33.29709 -31.36742 -28.90179 -27.74152 -23.99310 -23.14626 -21.78506 -18.96815 -18.00263 -17.08010 -16.77274 -16.15746 -16.07684 -15.34255 -14.94842 -14.40006 -13.34066 -13.21230 -12.98787 -12.82251 -12.63233 -12.33624 -12.12357 -12.00065 -11.53238 -11.22871 -10.74845 -10.62929 -9.80762 -8.54904 -8.13640 -6.58026 0.18404 0.55677 1.36940 1.39647 1.52227 1.55728 2.17388 2.22874 2.40216 2.75041 3.38053 3.79176 4.04302 4.24472 4.38993 4.48196 4.91900 5.05940 5.19931 5.30635 5.45761 5.52791 5.82903 6.15819 6.53090 6.63309 6.89719 7.53673 8.43443 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.034729 B = 0.010466 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.059791 B = 2674.609306 C = 3468.420661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.461 4.461 8 H 0.092 0.908 9 C 0.216 3.784 10 N -0.380 5.380 11 N -0.302 5.302 12 C 0.096 3.904 13 C -0.188 4.188 14 C -0.064 4.064 15 C -0.157 4.157 16 C 0.095 3.905 17 C -0.286 4.286 18 Cl -0.062 7.062 19 H 0.283 0.717 20 H 0.167 0.833 21 H 0.190 0.810 22 H 0.178 0.822 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 -8.866 -1.090 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.193 4.193 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.498 4.498 8 H 0.110 0.890 9 C 0.072 3.928 10 N -0.214 5.214 11 N -0.065 5.065 12 C -0.034 4.034 13 C -0.209 4.209 14 C -0.087 4.087 15 C -0.177 4.177 16 C -0.023 4.023 17 C -0.324 4.324 18 Cl -0.035 7.035 19 H 0.093 0.907 20 H 0.184 0.816 21 H 0.207 0.793 22 H 0.196 0.804 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.485 -8.059 -1.011 8.494 hybrid contribution 1.242 0.522 -0.007 1.347 sum -1.243 -7.537 -1.018 7.706 Atomic orbital electron populations 1.70043 1.08889 1.29805 1.33872 1.26941 0.95745 1.04770 0.91885 0.85015 0.79022 0.75299 0.79312 1.18762 1.19111 1.17712 1.19168 0.94871 0.88679 1.47084 0.88977 1.19732 0.89653 0.92922 0.90503 1.79398 1.13809 0.84954 1.43251 1.46847 1.05054 1.08304 1.46298 1.21990 0.87564 0.94142 0.99670 1.21140 1.01491 0.90640 1.07662 1.21490 0.90413 1.02009 0.94752 1.20775 1.01208 0.88933 1.06815 1.19394 0.86787 0.93766 1.02337 1.20725 0.84190 0.93252 1.34184 1.98138 1.12369 1.94723 1.98228 0.90700 0.81556 0.79335 0.80436 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.53 11.94 21.81 0.26 -45.27 14 2 C 0.02 1.32 5.49 85.22 0.47 1.79 14 3 Si 0.99 40.45 29.56 68.60 2.03 42.47 14 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 14 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 14 6 H -0.25 -9.93 7.11 99.48 0.71 -9.22 14 7 C -0.46 -26.61 9.22 23.45 0.22 -26.39 14 8 H 0.09 5.08 7.76 -2.91 -0.02 5.06 14 9 C 0.22 12.79 6.73 40.40 0.27 13.07 14 10 N -0.38 -22.46 10.89 -52.12 -0.57 -23.03 14 11 N -0.30 -14.77 3.89 -187.68 -0.73 -15.50 14 12 C 0.10 3.48 11.18 83.25 0.93 4.41 14 13 C -0.19 -4.89 9.98 22.08 0.22 -4.67 14 14 C -0.06 -1.64 10.07 22.30 0.22 -1.42 14 15 C -0.16 -5.47 10.12 22.46 0.23 -5.24 14 16 C 0.09 4.43 6.78 39.02 0.26 4.69 14 17 C -0.29 -14.93 6.79 23.01 0.16 -14.77 14 18 Cl -0.06 -2.76 29.05 -2.72 -0.08 -2.84 14 19 H 0.28 14.52 8.30 -92.71 -0.77 13.75 14 20 H 0.17 5.36 8.06 -2.91 -0.02 5.34 14 21 H 0.19 2.98 8.06 -2.91 -0.02 2.96 14 22 H 0.18 2.78 8.06 -2.91 -0.02 2.76 14 23 H 0.15 4.48 8.06 -2.91 -0.02 4.45 14 Total: -1.00 -71.88 231.30 5.13 -66.76 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.24 Total: 5.94 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 2.98 Total: -28.53 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.04 Total: -83.80 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.08 Total: -2.84 kcal Total: -71.88 5.13 -66.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214268.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.909 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds