Wall clock time and date at job start Mon Mar 30 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31069 * 126.65585 * 269.68308 * 10 9 7 12 12 N 1.28839 * 107.98928 * 179.89960 * 11 10 9 13 13 N 1.28744 * 109.39767 * 0.37536 * 12 11 10 14 14 N 1.29015 * 108.80363 * 359.77005 * 13 12 11 15 15 C 1.46501 * 126.43589 * 179.97438 * 14 13 12 16 16 F 1.39896 * 109.47132 * 270.02485 * 15 14 13 17 17 F 1.39901 * 109.47175 * 30.02336 * 15 14 13 18 18 F 1.39902 * 109.47268 * 150.02173 * 15 14 13 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7344 -4.2385 -1.0644 12 7 3.5309 -5.1652 -0.6562 13 7 3.5419 -5.1831 0.6311 14 7 2.7523 -4.2603 1.0666 15 6 2.4756 -3.9427 2.4697 16 9 1.3848 -4.6984 2.9126 17 9 3.5990 -4.2455 3.2467 18 9 2.1790 -2.5808 2.5898 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215368.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:07 Heat of formation + Delta-G solvation = -41.214078 kcal Electronic energy + Delta-G solvation = -15494.137330 eV Core-core repulsion = 12186.059293 eV Total energy + Delta-G solvation = -3308.078037 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.042 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -51.74027 -49.37397 -49.32662 -45.51475 -36.64203 -35.94258 -34.04483 -30.60488 -28.27440 -26.03423 -24.80187 -23.43980 -20.82984 -20.49844 -19.81241 -18.82251 -17.81163 -16.96760 -16.15000 -16.10699 -16.06776 -15.70072 -15.51163 -15.44189 -15.39052 -14.79306 -14.47537 -13.72078 -13.40977 -13.02404 -12.95988 -12.67326 -12.53475 -12.11540 -11.98949 -11.11241 -10.67845 -8.31514 -6.44556 -0.44275 -0.33166 0.89035 1.38911 1.42995 1.46760 1.56801 2.08267 2.37533 2.61246 2.89258 3.01683 3.23540 3.94644 4.14945 4.50109 4.95617 5.10333 5.56715 5.83263 6.59121 7.14712 7.25238 8.79365 Molecular weight = 222.04amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.011271 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.368142 B = 2483.673364 C = 2835.739707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.092 3.908 10 C 0.278 3.722 11 N -0.325 5.325 12 N -0.061 5.061 13 N -0.082 5.082 14 N -0.394 5.394 15 C 0.698 3.302 16 F -0.133 7.133 17 F -0.126 7.126 18 F -0.114 7.114 19 H 0.273 0.727 20 H 0.055 0.945 21 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -4.463 6.844 8.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.171 4.171 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.052 3.948 10 C 0.003 3.997 11 N -0.172 5.172 12 N -0.056 5.056 13 N -0.068 5.068 14 N -0.208 5.208 15 C 0.564 3.436 16 F -0.114 7.114 17 F -0.107 7.107 18 F -0.096 7.096 19 H 0.082 0.918 20 H 0.073 0.927 21 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.185 -5.318 6.248 8.802 hybrid contribution -0.218 1.322 0.611 1.473 sum 2.967 -3.996 6.859 8.475 Atomic orbital electron populations 1.69991 1.07171 1.28694 1.48993 1.25597 0.95667 1.02278 0.93606 0.85428 0.78710 0.78940 0.78211 1.19576 1.20171 1.19699 1.20876 0.92786 0.89627 1.54113 0.92889 1.18198 0.90290 0.85392 1.00950 1.27499 0.96309 0.95892 0.80045 1.75153 1.11006 1.07091 1.23916 1.78496 1.13177 1.13490 1.00433 1.78847 1.11168 1.08640 1.08186 1.49752 1.34687 1.27055 1.09271 1.17365 0.75830 0.76118 0.74246 1.93368 1.53841 1.76099 1.88104 1.93357 1.51102 1.93040 1.73222 1.93537 1.92816 1.28689 1.94529 0.91790 0.92677 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.82 13.29 21.45 0.28 -47.53 14 2 C 0.03 1.52 5.46 84.66 0.46 1.99 14 3 Si 0.96 40.15 29.54 68.60 2.03 42.18 14 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 14 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 14 6 H -0.27 -10.93 7.11 99.48 0.71 -10.23 14 7 C -0.54 -26.78 8.37 25.60 0.21 -26.57 14 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 14 9 C 0.09 4.21 4.66 29.10 0.14 4.35 14 10 C 0.28 11.75 7.22 138.14 1.00 12.75 14 11 N -0.33 -14.23 12.36 -50.46 -0.62 -14.85 14 12 N -0.06 -2.51 13.43 37.01 0.50 -2.02 14 13 N -0.08 -3.13 13.08 37.02 0.48 -2.65 14 14 N -0.39 -14.76 3.64 -352.56 -1.28 -16.04 14 15 C 0.70 21.89 3.96 127.77 0.51 22.40 14 16 F -0.13 -3.73 17.51 44.97 0.79 -2.94 14 17 F -0.13 -3.50 17.30 44.97 0.78 -2.72 14 18 F -0.11 -3.96 14.60 44.97 0.66 -3.30 14 19 H 0.27 13.46 8.31 -92.70 -0.77 12.69 14 20 H 0.06 2.49 7.13 -2.38 -0.02 2.47 14 21 H 0.06 2.86 8.14 -2.39 -0.02 2.84 14 Total: -1.00 -52.90 217.05 7.21 -45.68 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: 1.29 Total: -10.73 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 2.32 Total: 14.92 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -0.64 Total: -83.09 kcal Atomic # 9 Polarization: -11.18 SS G_CDS: 2.22 Total: -8.96 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -52.90 7.21 -45.68 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215368.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.470 kcal (2) G-P(sol) polarization free energy of solvation -52.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds