Wall clock time and date at job start Mon Mar 30 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86796 * 119.99956 * 2 1 4 4 H 1.48504 * 109.47311 * 275.41224 * 3 2 1 5 5 H 1.48503 * 109.47368 * 35.41086 * 3 2 1 6 6 H 1.48499 * 109.47492 * 155.41319 * 3 2 1 7 7 C 1.39864 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00040 * 341.70196 * 7 2 1 9 9 C 1.41336 * 120.00229 * 161.69226 * 7 2 1 10 10 C 1.40271 * 120.02364 * 330.12802 * 9 7 2 11 11 C 1.39367 * 119.32430 * 179.97438 * 10 9 7 12 12 C 1.46147 * 133.81398 * 179.97438 * 11 10 9 13 13 N 1.30213 * 107.68056 * 180.02562 * 12 11 10 14 14 N 1.39821 * 110.15565 * 0.02562 * 13 12 11 15 15 H 0.96999 * 125.38671 * 179.97438 * 14 13 12 16 16 C 1.36777 * 109.22560 * 0.22892 * 14 13 12 17 17 C 1.39934 * 133.41732 * 180.39627 * 16 14 13 18 18 Cl 1.73599 * 119.83664 * 359.42759 * 17 16 14 19 19 C 1.35987 * 120.32585 * 179.64570 * 17 16 14 20 20 H 0.97002 * 119.99990 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.34242 * 359.97438 * 10 9 7 22 22 H 1.07995 * 126.16189 * 0.02562 * 12 11 10 23 23 H 1.08002 * 119.70977 * 179.73011 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3760 2.1125 -1.3938 5 1 1.5022 2.6170 0.8113 6 1 3.5929 1.4099 0.5825 7 6 2.0082 -1.2112 0.0005 8 1 1.5092 -2.1228 0.2946 9 6 3.3680 -1.2424 -0.3839 10 6 3.8555 -0.3134 -1.3150 11 6 5.1989 -0.3569 -1.6833 12 6 6.0236 0.4307 -2.5973 13 7 7.2322 -0.0518 -2.5550 14 7 7.2904 -1.1282 -1.6645 15 1 8.0835 -1.6496 -1.4645 16 6 6.0507 -1.3334 -1.1244 17 6 5.5465 -2.2488 -0.1938 18 17 6.5977 -3.4444 0.4983 19 6 4.2362 -2.2092 0.1678 20 1 -0.4850 0.8401 -0.0004 21 1 3.1967 0.4282 -1.7421 22 1 5.6905 1.2631 -3.1994 23 1 3.8566 -2.9232 0.8837 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227934.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:27 Heat of formation + Delta-G solvation = 47.359950 kcal Electronic energy + Delta-G solvation = -12411.240141 eV Core-core repulsion = 10057.276116 eV Total energy + Delta-G solvation = -2353.964025 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.87979 -38.39684 -37.37227 -35.13200 -33.01922 -31.32064 -30.61842 -26.69013 -23.97642 -22.86379 -22.11901 -19.46933 -18.89539 -17.34972 -16.69761 -15.98214 -15.73007 -15.67243 -14.75418 -14.65035 -14.20247 -13.68443 -13.34490 -12.77866 -12.69085 -12.36638 -11.90019 -11.87990 -11.69565 -11.53073 -11.03521 -10.82330 -9.53970 -8.86089 -8.83612 -6.40143 0.04716 0.67735 1.17269 1.32864 1.40881 1.55111 1.65376 1.91091 2.16859 2.50622 3.33838 3.81978 3.90073 4.20103 4.39665 4.58024 4.95493 5.01394 5.15883 5.32619 5.62218 5.68803 5.91397 6.29483 6.46308 6.60611 6.75182 6.81191 8.23498 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.011714 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.389121 B = 2389.821463 C = 3123.219007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.052 3.948 3 Si 0.956 3.044 4 H -0.250 1.250 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.474 4.474 8 H 0.065 0.935 9 C 0.057 3.943 10 C -0.197 4.197 11 C -0.132 4.132 12 C 0.055 3.945 13 N -0.260 5.260 14 N -0.506 5.506 15 H 0.442 0.558 16 C 0.037 3.963 17 C -0.023 4.023 18 Cl -0.077 7.077 19 C -0.125 4.125 20 H 0.294 0.706 21 H 0.114 0.886 22 H 0.225 0.775 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 0.723 -1.602 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.163 4.163 3 Si 0.780 3.220 4 H -0.174 1.174 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.053 3.947 10 C -0.220 4.220 11 C -0.139 4.139 12 C -0.142 4.142 13 N -0.075 5.075 14 N -0.225 5.225 15 H 0.287 0.713 16 C -0.077 4.077 17 C -0.053 4.053 18 Cl -0.048 7.048 19 C -0.147 4.147 20 H 0.104 0.896 21 H 0.132 0.868 22 H 0.241 0.759 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.526 0.792 -1.964 10.737 hybrid contribution -0.561 -0.119 0.690 0.897 sum 9.965 0.672 -1.274 10.069 Atomic orbital electron populations 1.69736 1.09081 1.31432 1.37177 1.26701 0.95242 1.03846 0.90507 0.85593 0.79460 0.76997 0.79958 1.17449 1.20877 1.17981 1.19289 0.93715 0.95934 1.41436 0.91701 1.17511 0.92913 0.92345 0.91906 1.20589 0.93566 1.04961 1.02865 1.19869 0.94485 0.98101 1.01493 1.25498 0.88807 1.00720 0.99151 1.76263 1.21409 1.00359 1.09485 1.45456 1.08390 1.29802 1.38847 0.71259 1.18164 0.87990 1.00162 1.01366 1.19362 0.91634 0.94375 0.99965 1.98295 1.66434 1.56115 1.83962 1.20923 0.90457 1.01895 1.01396 0.89589 0.86806 0.75854 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.42 13.93 21.81 0.30 -44.12 14 2 C 0.05 2.63 5.40 85.23 0.46 3.09 14 3 Si 0.96 40.25 24.52 68.60 1.68 41.93 14 4 H -0.25 -9.68 6.71 99.48 0.67 -9.01 14 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 14 6 H -0.26 -11.14 6.87 99.48 0.68 -10.45 14 7 C -0.47 -24.83 9.55 23.43 0.22 -24.60 14 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 14 9 C 0.06 2.71 5.11 -21.30 -0.11 2.60 14 10 C -0.20 -8.79 7.23 23.04 0.17 -8.63 14 11 C -0.13 -5.32 6.35 -20.25 -0.13 -5.45 14 12 C 0.06 1.84 12.30 86.99 1.07 2.91 14 13 N -0.26 -8.70 12.54 -52.95 -0.66 -9.37 14 14 N -0.51 -16.94 7.35 -51.09 -0.38 -17.32 14 15 H 0.44 12.24 8.96 -213.50 -1.91 10.33 14 16 C 0.04 1.45 7.12 39.49 0.28 1.73 14 17 C -0.02 -0.89 6.29 22.16 0.14 -0.76 14 18 Cl -0.08 -2.41 28.94 -2.72 -0.08 -2.49 14 19 C -0.12 -5.35 9.44 22.47 0.21 -5.14 14 20 H 0.29 13.85 8.30 -92.71 -0.77 13.08 14 21 H 0.11 4.96 4.74 -2.91 -0.01 4.95 14 22 H 0.23 5.42 8.06 -2.91 -0.02 5.40 14 23 H 0.13 5.28 8.06 -2.91 -0.02 5.26 14 Total: -1.00 -55.57 222.91 2.47 -53.09 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -0.71 Total: 12.52 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 2.32 Total: -34.25 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -0.74 Total: -70.81 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.68 Total: 41.93 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.49 kcal Total: -55.57 2.47 -53.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227934.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.454 kcal (2) G-P(sol) polarization free energy of solvation -55.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds