Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86805 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47234 * 275.41259 * 3 2 1 5 5 H 1.48500 * 109.46791 * 35.41446 * 3 2 1 6 6 H 1.48501 * 109.46876 * 155.41204 * 3 2 1 7 7 C 1.39948 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 341.71858 * 7 2 1 9 9 C 1.41077 * 119.99976 * 161.72514 * 7 2 1 10 10 C 1.40660 * 120.27770 * 330.13834 * 9 7 2 11 11 C 1.37885 * 120.38383 * 180.02562 * 10 9 7 12 12 C 1.38338 * 120.57613 * 0.02562 * 11 10 9 13 13 C 1.39709 * 120.14316 * 359.97438 * 12 11 10 14 14 C 1.46806 * 134.19944 * 179.65585 * 13 12 11 15 15 C 1.34238 * 106.10421 * 179.89584 * 14 13 12 16 16 Cl 1.73602 * 124.98892 * 180.11978 * 15 14 13 17 17 O 1.34395 * 110.01496 * 0.40463 * 15 14 13 18 18 C 1.34551 * 110.92450 * 359.73380 * 17 15 14 19 19 H 0.96999 * 120.00193 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.80479 * 0.02589 * 10 9 7 21 21 H 1.08000 * 119.71353 * 180.02562 * 11 10 9 22 22 H 1.08008 * 119.92783 * 179.97438 * 12 11 10 23 23 H 1.07998 * 126.94828 * 0.27276 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3756 2.1125 -1.3938 5 1 1.5018 2.6169 0.8113 6 1 3.5926 1.4098 0.5826 7 6 2.0082 -1.2120 -0.0005 8 1 1.5091 -2.1238 0.2924 9 6 3.3656 -1.2426 -0.3837 10 6 3.8607 -0.3124 -1.3153 11 6 5.1869 -0.3406 -1.6917 12 6 6.0493 -1.2828 -1.1604 13 6 5.5820 -2.2177 -0.2333 14 6 6.2014 -3.3265 0.5031 15 6 5.2283 -3.8628 1.2563 16 17 5.4296 -5.2127 2.3292 17 8 4.0740 -3.2052 1.0531 18 6 4.2390 -2.2079 0.1650 19 1 -0.4850 0.8400 0.0004 20 1 3.1982 0.4284 -1.7383 21 1 5.5557 0.3790 -2.4076 22 1 7.0860 -1.2957 -1.4630 23 1 7.2329 -3.6425 0.4538 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239817.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = 16.095402 kcal Electronic energy + Delta-G solvation = -12405.546156 eV Core-core repulsion = 10017.933647 eV Total energy + Delta-G solvation = -2387.612509 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.48021 -36.95468 -36.48250 -33.87790 -31.87268 -29.97185 -28.25611 -25.27685 -22.04908 -21.47338 -20.15524 -17.83405 -16.58802 -16.29185 -15.49267 -15.24028 -14.25790 -13.60050 -12.86956 -12.65829 -12.51848 -12.16703 -11.89437 -11.48402 -11.39701 -10.96801 -10.85033 -10.51874 -9.95221 -9.86109 -9.42800 -8.95388 -7.64854 -7.33920 -7.12981 -4.61115 1.63430 1.81381 2.46677 2.92032 3.06989 3.14574 3.26535 3.87106 4.15369 4.35531 5.15168 5.53991 5.68577 5.83338 6.16089 6.28744 6.45051 6.65401 6.82011 7.05525 7.26286 7.42084 7.61886 7.72951 7.86798 8.16088 8.42315 8.55016 9.87787 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.035513 B = 0.009931 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.246998 B = 2818.790287 C = 3417.257929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.430 4.430 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.251 4.251 11 C -0.067 4.067 12 C -0.217 4.217 13 C -0.088 4.088 14 C -0.192 4.192 15 C 0.051 3.949 16 Cl -0.001 7.001 17 O -0.177 6.177 18 C -0.010 4.010 19 H 0.290 0.710 20 H 0.113 0.887 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 -2.205 1.037 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.164 1.164 7 C -0.457 4.457 8 H 0.114 0.886 9 C 0.114 3.886 10 C -0.271 4.271 11 C -0.085 4.085 12 C -0.237 4.237 13 C -0.089 4.089 14 C -0.212 4.212 15 C -0.025 4.025 16 Cl 0.028 6.972 17 O -0.079 6.079 18 C -0.057 4.057 19 H 0.100 0.900 20 H 0.130 0.870 21 H 0.121 0.879 22 H 0.119 0.881 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.140 -2.295 1.283 7.609 hybrid contribution 0.293 0.435 0.138 0.542 sum 7.433 -1.860 1.421 7.793 Atomic orbital electron populations 1.69686 1.08196 1.30815 1.32826 1.26237 0.94853 1.01957 0.90776 0.86217 0.81408 0.79144 0.79174 1.19196 1.21539 1.16438 1.19507 0.92829 0.96612 1.36722 0.88631 1.16665 0.91915 0.88919 0.91101 1.20599 0.96080 1.05474 1.04950 1.20483 0.93355 0.96792 0.97880 1.19669 0.98726 1.00512 1.04780 1.19457 0.92906 0.96914 0.99642 1.22025 0.98905 0.99276 1.01038 1.22020 0.86892 0.93932 0.99610 1.98373 1.95631 1.40089 1.63129 1.83676 1.31912 1.39003 1.53348 1.19838 0.94828 0.94489 0.96498 0.89964 0.86965 0.87885 0.88056 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 13.93 55.55 0.77 -19.73 14 2 C 0.08 2.12 5.40 -17.33 -0.09 2.02 14 3 Si 0.92 20.11 24.52 -169.99 -4.17 15.95 14 4 H -0.27 -5.57 6.71 56.52 0.38 -5.19 14 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 14 6 H -0.24 -5.49 6.87 56.52 0.39 -5.10 14 7 C -0.43 -11.61 9.56 -37.87 -0.36 -11.98 14 8 H 0.10 2.75 8.06 -52.49 -0.42 2.33 14 9 C 0.12 3.02 5.11 -106.75 -0.55 2.47 14 10 C -0.25 -5.93 7.16 -38.80 -0.28 -6.20 14 11 C -0.07 -1.41 10.00 -39.67 -0.40 -1.81 14 12 C -0.22 -4.54 10.10 -39.00 -0.39 -4.94 14 13 C -0.09 -1.97 6.39 -105.19 -0.67 -2.64 14 14 C -0.19 -3.67 11.10 -37.53 -0.42 -4.09 14 15 C 0.05 1.01 7.84 29.32 0.23 1.24 14 16 Cl 0.00 -0.01 29.28 -51.86 -1.52 -1.53 14 17 O -0.18 -4.21 10.57 4.78 0.05 -4.16 14 18 C -0.01 -0.24 7.15 -37.74 -0.27 -0.51 14 19 H 0.29 6.71 8.30 -40.82 -0.34 6.37 14 20 H 0.11 2.57 4.72 -52.48 -0.25 2.32 14 21 H 0.10 1.82 8.06 -52.49 -0.42 1.40 14 22 H 0.10 1.82 8.06 -52.48 -0.42 1.40 14 23 H 0.15 2.35 8.06 -52.49 -0.42 1.93 14 LS Contribution 224.04 15.07 3.38 3.38 Total: -1.00 -26.94 224.04 -5.79 -32.74 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -1.11 Total: -0.21 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.20 Total: -26.43 kcal Atomic # 7 Polarization: -20.51 SS G_CDS: 0.77 Total: -19.73 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.05 Total: -4.16 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.17 Total: 15.95 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.52 Total: -1.53 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -26.94 -5.79 -32.74 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239817.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.834 kcal (2) G-P(sol) polarization free energy of solvation -26.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds