Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86805 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47234 * 275.41259 * 3 2 1 5 5 H 1.48500 * 109.46791 * 35.41446 * 3 2 1 6 6 H 1.48501 * 109.46876 * 155.41204 * 3 2 1 7 7 C 1.39948 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 341.71858 * 7 2 1 9 9 C 1.41077 * 119.99976 * 161.72514 * 7 2 1 10 10 C 1.40660 * 120.27770 * 330.13834 * 9 7 2 11 11 C 1.37885 * 120.38383 * 180.02562 * 10 9 7 12 12 C 1.38338 * 120.57613 * 0.02562 * 11 10 9 13 13 C 1.39709 * 120.14316 * 359.97438 * 12 11 10 14 14 C 1.46806 * 134.19944 * 179.65585 * 13 12 11 15 15 C 1.34238 * 106.10421 * 179.89584 * 14 13 12 16 16 Cl 1.73602 * 124.98892 * 180.11978 * 15 14 13 17 17 O 1.34395 * 110.01496 * 0.40463 * 15 14 13 18 18 C 1.34551 * 110.92450 * 359.73380 * 17 15 14 19 19 H 0.96999 * 120.00193 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.80479 * 0.02589 * 10 9 7 21 21 H 1.08000 * 119.71353 * 180.02562 * 11 10 9 22 22 H 1.08008 * 119.92783 * 179.97438 * 12 11 10 23 23 H 1.07998 * 126.94828 * 0.27276 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3756 2.1125 -1.3938 5 1 1.5018 2.6169 0.8113 6 1 3.5926 1.4098 0.5826 7 6 2.0082 -1.2120 -0.0005 8 1 1.5091 -2.1238 0.2924 9 6 3.3656 -1.2426 -0.3837 10 6 3.8607 -0.3124 -1.3153 11 6 5.1869 -0.3406 -1.6917 12 6 6.0493 -1.2828 -1.1604 13 6 5.5820 -2.2177 -0.2333 14 6 6.2014 -3.3265 0.5031 15 6 5.2283 -3.8628 1.2563 16 17 5.4296 -5.2127 2.3292 17 8 4.0740 -3.2052 1.0531 18 6 4.2390 -2.2079 0.1650 19 1 -0.4850 0.8400 0.0004 20 1 3.1982 0.4284 -1.7383 21 1 5.5557 0.3790 -2.4076 22 1 7.0860 -1.2957 -1.4630 23 1 7.2329 -3.6425 0.4538 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239817.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = 0.240730 kcal Electronic energy + Delta-G solvation = -12406.233666 eV Core-core repulsion = 10017.933647 eV Total energy + Delta-G solvation = -2388.300019 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.17176 -38.65331 -37.94919 -35.70511 -33.59437 -31.72542 -29.94474 -27.13130 -23.75622 -23.20494 -21.85204 -19.62206 -18.30838 -18.01071 -17.20897 -16.96674 -15.96768 -15.34850 -14.54515 -14.38984 -14.10946 -13.88201 -13.48522 -13.12500 -12.93466 -12.72845 -12.42850 -12.18790 -11.76933 -11.62872 -11.16396 -10.63364 -9.40615 -9.04318 -8.99181 -6.56627 0.13387 0.16044 0.69397 1.21739 1.31712 1.43662 1.52431 2.09943 2.49071 2.55424 3.30093 3.96273 4.08775 4.21947 4.51821 4.69855 4.72680 5.00494 5.06788 5.33680 5.54457 5.64762 5.85274 5.97866 6.04608 6.25310 6.58675 6.65607 8.08858 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.035513 B = 0.009931 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.246998 B = 2818.790287 C = 3417.257929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.047 3.953 3 Si 0.970 3.030 4 H -0.243 1.243 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.478 4.478 8 H 0.049 0.951 9 C 0.094 3.906 10 C -0.251 4.251 11 C -0.074 4.074 12 C -0.192 4.192 13 C -0.104 4.104 14 C -0.175 4.175 15 C 0.040 3.960 16 Cl 0.036 6.964 17 O -0.211 6.211 18 C -0.047 4.047 19 H 0.299 0.701 20 H 0.116 0.884 21 H 0.148 0.852 22 H 0.145 0.855 23 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.200 -1.521 0.245 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.169 4.169 3 Si 0.792 3.208 4 H -0.167 1.167 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.091 3.909 10 C -0.270 4.270 11 C -0.092 4.092 12 C -0.211 4.211 13 C -0.105 4.105 14 C -0.195 4.195 15 C -0.034 4.034 16 Cl 0.065 6.935 17 O -0.114 6.114 18 C -0.093 4.093 19 H 0.110 0.890 20 H 0.134 0.866 21 H 0.165 0.835 22 H 0.162 0.838 23 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.648 -1.628 0.483 10.782 hybrid contribution -0.531 0.002 0.397 0.664 sum 10.116 -1.625 0.881 10.284 Atomic orbital electron populations 1.69710 1.09334 1.32060 1.35242 1.26948 0.95493 1.04390 0.90041 0.85408 0.79432 0.75590 0.80408 1.16715 1.20088 1.17695 1.19352 0.94351 0.95914 1.41029 0.93306 1.16905 0.91555 0.90496 0.91963 1.20869 0.97633 1.04639 1.03899 1.20976 0.92120 0.97725 0.98374 1.20300 1.00614 0.98194 1.01991 1.19985 0.92054 0.98222 1.00236 1.22466 1.00426 0.97408 0.99206 1.22617 0.86019 0.94593 1.00214 1.98384 1.95312 1.37951 1.61872 1.83649 1.34176 1.39671 1.53948 1.20119 0.96249 0.95299 0.97666 0.89035 0.86603 0.83463 0.83763 0.78639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.79 13.93 21.83 0.30 -45.49 14 2 C 0.05 2.53 5.40 85.25 0.46 2.99 14 3 Si 0.97 41.56 24.52 68.60 1.68 43.25 14 4 H -0.24 -9.38 6.71 99.48 0.67 -8.72 14 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 14 6 H -0.25 -11.18 6.87 99.48 0.68 -10.50 14 7 C -0.48 -27.72 9.56 23.38 0.22 -27.50 14 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 14 9 C 0.09 4.95 5.11 -21.25 -0.11 4.84 14 10 C -0.25 -11.51 7.16 22.78 0.16 -11.35 14 11 C -0.07 -2.82 10.00 22.21 0.22 -2.60 14 12 C -0.19 -7.12 10.10 22.65 0.23 -6.89 14 13 C -0.10 -4.36 6.39 -20.23 -0.13 -4.49 14 14 C -0.18 -6.11 11.10 23.60 0.26 -5.85 14 15 C 0.04 1.52 7.84 66.91 0.52 2.05 14 16 Cl 0.04 1.05 29.28 -2.72 -0.08 0.97 14 17 O -0.21 -10.26 10.57 -5.81 -0.06 -10.32 14 18 C -0.05 -2.35 7.15 23.47 0.17 -2.18 14 19 H 0.30 14.43 8.30 -92.71 -0.77 13.66 14 20 H 0.12 5.14 4.72 -2.91 -0.01 5.13 14 21 H 0.15 4.32 8.06 -2.91 -0.02 4.30 14 22 H 0.14 4.16 8.06 -2.91 -0.02 4.14 14 23 H 0.20 4.96 8.06 -2.91 -0.02 4.93 14 Total: -1.00 -61.86 224.04 5.04 -56.82 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.18 Total: 5.75 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 2.01 Total: -50.99 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.30 Total: -45.49 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.06 Total: -10.32 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.68 Total: 43.25 kcal Atomic # 17 Polarization: 1.05 SS G_CDS: -0.08 Total: 0.97 kcal Total: -61.86 5.04 -56.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239817.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.065 kcal (2) G-P(sol) polarization free energy of solvation -61.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds