Wall clock time and date at job start Mon Mar 30 2020 02:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31039 * 1 3 3 Si 1.86801 * 119.99703 * 2 1 4 4 H 1.48502 * 109.47151 * 270.89836 * 3 2 1 5 5 H 1.48498 * 109.47156 * 30.89819 * 3 2 1 6 6 H 1.48503 * 109.47393 * 150.89695 * 3 2 1 7 7 C 1.39760 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00367 * 344.46123 * 7 2 1 9 9 C 1.40892 * 119.99907 * 164.45014 * 7 2 1 10 10 C 1.38893 * 126.98928 * 341.20285 * 9 7 2 11 11 N 1.35747 * 109.26138 * 180.02562 * 10 9 7 12 12 H 0.97007 * 124.62875 * 179.97438 * 11 10 9 13 13 C 1.37922 * 110.74450 * 359.97438 * 11 10 9 14 14 N 1.32698 * 132.54724 * 180.32073 * 13 11 10 15 15 C 1.31641 * 121.76100 * 180.20861 * 14 13 11 16 16 C 1.38620 * 121.50839 * 359.43724 * 15 14 13 17 17 Cl 1.73608 * 120.36878 * 180.29461 * 16 15 14 18 18 C 1.38543 * 119.25940 * 0.27335 * 16 15 14 19 19 C 1.39254 * 118.06642 * 0.02562 * 18 16 15 20 20 H 0.96993 * 120.00127 * 0.02562 * 1 2 3 21 21 H 1.07995 * 125.36706 * 359.97438 * 10 9 7 22 22 H 1.07996 * 119.24500 * 179.70695 * 15 14 13 23 23 H 1.08001 * 120.96467 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 2.4728 2.0575 -1.3999 5 1 1.4513 2.6471 0.7189 6 1 3.5513 1.4350 0.6810 7 6 2.0093 -1.2103 0.0005 8 1 1.4990 -2.1284 0.2515 9 6 3.3795 -1.2327 -0.3265 10 6 4.0925 -0.2534 -1.0062 11 7 5.3871 -0.6440 -1.1259 12 1 6.0808 -0.1264 -1.5640 13 6 5.5815 -1.8772 -0.5397 14 7 6.6539 -2.6468 -0.4032 15 6 6.5970 -3.8131 0.2045 16 6 5.4132 -4.2920 0.7439 17 17 5.3735 -5.8312 1.5459 18 6 4.2623 -3.5284 0.6361 19 6 4.3488 -2.3015 -0.0169 20 1 -0.4850 0.8400 -0.0004 21 1 3.6816 0.6723 -1.3810 22 1 7.4940 -4.4086 0.2886 23 1 3.3252 -3.8746 1.0466 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261245508.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:41 Heat of formation + Delta-G solvation = 53.245076 kcal Electronic energy + Delta-G solvation = -12311.967687 eV Core-core repulsion = 9958.258860 eV Total energy + Delta-G solvation = -2353.708827 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.43451 -37.14382 -35.78859 -33.72756 -32.04257 -29.63924 -28.68136 -24.98127 -23.03237 -21.77269 -19.87673 -17.81788 -16.70404 -15.96403 -15.61160 -14.68238 -14.26245 -14.11182 -13.35397 -12.68280 -12.36703 -12.33562 -11.77837 -11.38312 -11.12209 -10.90028 -10.71455 -10.48541 -9.79785 -9.64680 -9.17525 -8.75537 -7.58568 -7.29017 -6.93180 -4.33014 1.71573 1.89568 2.67050 2.93247 3.10786 3.21275 3.61507 3.76165 3.93656 4.45717 5.14171 5.17588 5.45087 5.61822 5.76249 6.19748 6.30142 6.52130 6.68819 6.94667 7.22636 7.34974 7.88014 8.03152 8.33334 8.50218 8.74340 8.79593 10.10678 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.040215 B = 0.009081 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.091694 B = 3082.706422 C = 3674.367640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.082 3.918 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.418 4.418 8 H 0.091 0.909 9 C 0.050 3.950 10 C -0.176 4.176 11 N -0.554 5.554 12 H 0.403 0.597 13 C 0.281 3.719 14 N -0.509 5.509 15 C 0.145 3.855 16 C -0.159 4.159 17 Cl -0.088 7.088 18 C 0.003 3.997 19 C -0.161 4.161 20 H 0.285 0.715 21 H 0.152 0.848 22 H 0.153 0.847 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -2.787 0.545 7.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.449 4.449 8 H 0.109 0.891 9 C 0.044 3.956 10 C -0.297 4.297 11 N -0.158 5.158 12 H 0.238 0.762 13 C 0.044 3.956 14 N -0.224 5.224 15 C -0.023 4.023 16 C -0.192 4.192 17 Cl -0.060 7.060 18 C -0.023 4.023 19 C -0.170 4.170 20 H 0.095 0.905 21 H 0.168 0.832 22 H 0.170 0.830 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.926 -2.288 0.185 8.252 hybrid contribution -0.268 0.647 0.163 0.719 sum 7.658 -1.641 0.348 7.840 Atomic orbital electron populations 1.69730 1.07720 1.30017 1.36760 1.25968 0.94790 1.01242 0.91549 0.86381 0.80966 0.80094 0.78898 1.19818 1.21917 1.16760 1.18656 0.90772 0.95935 1.39510 0.89085 1.18125 0.92428 0.89764 0.95294 1.21575 0.83274 1.05028 1.19864 1.40730 1.10192 1.14752 1.50149 0.76171 1.18405 0.90332 0.88562 0.98261 1.66518 1.29949 1.05537 1.20382 1.21980 0.95702 0.90872 0.93712 1.21308 0.97068 0.90807 1.10005 1.98292 1.98854 1.29541 1.79307 1.20700 0.96925 0.91155 0.93534 1.19851 0.95176 0.96873 1.05127 0.90511 0.83156 0.82957 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.30 13.94 55.54 0.77 -20.53 14 2 C 0.08 2.08 5.51 -17.32 -0.10 1.98 14 3 Si 0.91 19.68 24.54 -169.99 -4.17 15.51 14 4 H -0.27 -5.61 6.70 56.52 0.38 -5.23 14 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 14 6 H -0.24 -5.37 6.56 56.52 0.37 -5.00 14 7 C -0.42 -10.95 9.94 -38.01 -0.38 -11.33 14 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 14 9 C 0.05 1.24 5.67 -104.85 -0.59 0.64 14 10 C -0.18 -3.96 9.26 -15.58 -0.14 -4.10 14 11 N -0.55 -11.27 5.98 -11.27 -0.07 -11.34 14 12 H 0.40 6.70 8.96 -40.82 -0.37 6.34 14 13 C 0.28 6.07 8.39 -155.30 -1.30 4.77 14 14 N -0.51 -10.13 10.38 -12.23 -0.13 -10.25 14 15 C 0.15 2.55 10.95 -17.49 -0.19 2.36 14 16 C -0.16 -2.86 6.34 -39.33 -0.25 -3.11 14 17 Cl -0.09 -1.34 28.99 -51.86 -1.50 -2.84 14 18 C 0.00 0.06 10.02 -39.09 -0.39 -0.33 14 19 C -0.16 -3.67 6.35 -104.88 -0.67 -4.34 14 20 H 0.28 6.74 8.30 -40.82 -0.34 6.40 14 21 H 0.15 3.25 4.17 -52.49 -0.22 3.03 14 22 H 0.15 2.16 8.06 -52.49 -0.42 1.73 14 23 H 0.13 2.60 8.06 -52.49 -0.42 2.17 14 LS Contribution 222.21 15.07 3.35 3.35 Total: -1.00 -27.04 222.21 -6.80 -33.84 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -1.04 Total: 5.72 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -4.01 Total: -13.46 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.58 Total: -42.12 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.17 Total: 15.51 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.50 Total: -2.84 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -27.04 -6.80 -33.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245508.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.084 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds