Wall clock time and date at job start Mon Mar 30 2020 02:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31039 * 1 3 3 Si 1.86801 * 119.99703 * 2 1 4 4 H 1.48502 * 109.47151 * 270.89836 * 3 2 1 5 5 H 1.48498 * 109.47156 * 30.89819 * 3 2 1 6 6 H 1.48503 * 109.47393 * 150.89695 * 3 2 1 7 7 C 1.39760 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00367 * 344.46123 * 7 2 1 9 9 C 1.40892 * 119.99907 * 164.45014 * 7 2 1 10 10 C 1.38893 * 126.98928 * 341.20285 * 9 7 2 11 11 N 1.35747 * 109.26138 * 180.02562 * 10 9 7 12 12 H 0.97007 * 124.62875 * 179.97438 * 11 10 9 13 13 C 1.37922 * 110.74450 * 359.97438 * 11 10 9 14 14 N 1.32698 * 132.54724 * 180.32073 * 13 11 10 15 15 C 1.31641 * 121.76100 * 180.20861 * 14 13 11 16 16 C 1.38620 * 121.50839 * 359.43724 * 15 14 13 17 17 Cl 1.73608 * 120.36878 * 180.29461 * 16 15 14 18 18 C 1.38543 * 119.25940 * 0.27335 * 16 15 14 19 19 C 1.39254 * 118.06642 * 0.02562 * 18 16 15 20 20 H 0.96993 * 120.00127 * 0.02562 * 1 2 3 21 21 H 1.07995 * 125.36706 * 359.97438 * 10 9 7 22 22 H 1.07996 * 119.24500 * 179.70695 * 15 14 13 23 23 H 1.08001 * 120.96467 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 2.4728 2.0575 -1.3999 5 1 1.4513 2.6471 0.7189 6 1 3.5513 1.4350 0.6810 7 6 2.0093 -1.2103 0.0005 8 1 1.4990 -2.1284 0.2515 9 6 3.3795 -1.2327 -0.3265 10 6 4.0925 -0.2534 -1.0062 11 7 5.3871 -0.6440 -1.1259 12 1 6.0808 -0.1264 -1.5640 13 6 5.5815 -1.8772 -0.5397 14 7 6.6539 -2.6468 -0.4032 15 6 6.5970 -3.8131 0.2045 16 6 5.4132 -4.2920 0.7439 17 17 5.3735 -5.8312 1.5459 18 6 4.2623 -3.5284 0.6361 19 6 4.3488 -2.3015 -0.0169 20 1 -0.4850 0.8400 -0.0004 21 1 3.6816 0.6723 -1.3810 22 1 7.4940 -4.4086 0.2886 23 1 3.3252 -3.8746 1.0466 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261245508.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:41 Heat of formation + Delta-G solvation = 36.562055 kcal Electronic energy + Delta-G solvation = -12312.691117 eV Core-core repulsion = 9958.258860 eV Total energy + Delta-G solvation = -2354.432257 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.08047 -38.72579 -37.20727 -35.55301 -33.70039 -31.36790 -30.30068 -26.79000 -24.66080 -23.37488 -21.66507 -19.47363 -18.46993 -17.63242 -17.16951 -16.36817 -15.88350 -15.76993 -15.12885 -14.27088 -13.88640 -13.86555 -13.52169 -13.07574 -12.83889 -12.60725 -12.17656 -12.03069 -11.57629 -11.33398 -10.89933 -10.35101 -9.16057 -9.06499 -8.79444 -6.24100 0.08823 0.34243 1.21282 1.22305 1.36474 1.50681 1.83237 2.13605 2.20596 2.83124 3.26104 3.71873 3.93285 4.01481 4.12326 4.54242 4.70673 4.89218 5.03575 5.32007 5.48757 5.59456 6.12272 6.22833 6.56322 6.71433 6.86004 7.19181 8.30060 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.040215 B = 0.009081 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.091694 B = 3082.706422 C = 3674.367640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.041 3.959 3 Si 0.965 3.035 4 H -0.250 1.250 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.451 4.451 8 H 0.055 0.945 9 C 0.018 3.982 10 C -0.153 4.153 11 N -0.548 5.548 12 H 0.423 0.577 13 C 0.272 3.728 14 N -0.508 5.508 15 C 0.155 3.845 16 C -0.147 4.147 17 Cl -0.057 7.057 18 C -0.010 4.010 19 C -0.195 4.195 20 H 0.291 0.709 21 H 0.164 0.836 22 H 0.197 0.803 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.107 -2.841 0.369 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.172 4.172 3 Si 0.789 3.211 4 H -0.175 1.175 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.482 4.482 8 H 0.073 0.927 9 C 0.011 3.989 10 C -0.276 4.276 11 N -0.155 5.155 12 H 0.261 0.739 13 C 0.037 3.963 14 N -0.223 5.223 15 C -0.013 4.013 16 C -0.179 4.179 17 Cl -0.028 7.028 18 C -0.036 4.036 19 C -0.204 4.204 20 H 0.101 0.899 21 H 0.181 0.819 22 H 0.213 0.787 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.592 -2.355 -0.006 10.851 hybrid contribution -0.909 0.387 0.268 1.023 sum 9.683 -1.969 0.262 9.885 Atomic orbital electron populations 1.69779 1.08982 1.31126 1.39170 1.26698 0.95439 1.04008 0.91033 0.85539 0.79344 0.76293 0.79919 1.17509 1.21093 1.17262 1.18588 0.92000 0.95312 1.42347 0.92683 1.18251 0.92237 0.91690 0.96676 1.21760 0.83950 1.04419 1.17440 1.40659 1.09950 1.14719 1.50127 0.73898 1.18563 0.90344 0.89086 0.98337 1.66665 1.28965 1.06086 1.20612 1.22735 0.96867 0.90169 0.91551 1.21425 0.96300 0.91531 1.08628 1.98312 1.98789 1.27172 1.78544 1.20847 0.97983 0.91110 0.93668 1.20068 0.95542 0.97873 1.06908 0.89861 0.81929 0.78679 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.81 13.94 21.80 0.30 -46.51 14 2 C 0.04 2.12 5.51 85.18 0.47 2.59 14 3 Si 0.96 40.28 24.54 68.60 1.68 41.96 14 4 H -0.25 -9.47 6.70 99.48 0.67 -8.80 14 5 H -0.28 -11.40 7.11 99.48 0.71 -10.70 14 6 H -0.25 -10.46 6.56 99.48 0.65 -9.80 14 7 C -0.45 -24.79 9.94 23.29 0.23 -24.56 14 8 H 0.05 3.27 8.06 -2.91 -0.02 3.24 14 9 C 0.02 0.90 5.67 -20.01 -0.11 0.78 14 10 C -0.15 -6.69 9.26 84.24 0.78 -5.91 14 11 N -0.55 -21.15 5.98 -189.58 -1.13 -22.29 14 12 H 0.42 12.83 8.96 -92.70 -0.83 12.00 14 13 C 0.27 11.28 8.39 133.67 1.12 12.40 14 14 N -0.51 -18.68 10.38 -192.59 -2.00 -20.68 14 15 C 0.15 4.88 10.95 84.81 0.93 5.80 14 16 C -0.15 -4.92 6.34 22.43 0.14 -4.77 14 17 Cl -0.06 -1.55 28.99 -2.72 -0.08 -1.63 14 18 C -0.01 -0.39 10.02 22.59 0.23 -0.16 14 19 C -0.19 -8.88 6.35 -20.03 -0.13 -9.00 14 20 H 0.29 14.24 8.30 -92.71 -0.77 13.47 14 21 H 0.16 6.66 4.17 -2.91 -0.01 6.65 14 22 H 0.20 4.46 8.06 -2.91 -0.02 4.44 14 23 H 0.13 5.25 8.06 -2.91 -0.02 5.23 14 Total: -1.00 -59.02 222.21 2.78 -56.24 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.34 Total: 15.73 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 3.66 Total: -22.83 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -2.83 Total: -89.47 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.68 Total: 41.96 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -59.02 2.78 -56.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245508.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.801 kcal (2) G-P(sol) polarization free energy of solvation -59.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds