Wall clock time and date at job start Mon Mar 30 2020 03:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47078 * 2 1 4 4 C 1.50697 * 109.47097 * 239.99505 * 2 1 3 5 5 H 1.08003 * 119.99877 * 245.37631 * 4 2 1 6 6 C 1.37875 * 120.00022 * 65.38196 * 4 2 1 7 7 N 1.31510 * 119.99807 * 185.16074 * 6 4 2 8 8 Si 1.86800 * 119.99860 * 5.16554 * 6 4 2 9 9 H 1.48499 * 109.46834 * 269.99751 * 8 6 4 10 10 H 1.48498 * 109.47224 * 29.99858 * 8 6 4 11 11 H 1.48497 * 109.47062 * 150.00314 * 8 6 4 12 12 C 1.50701 * 109.46592 * 119.99637 * 2 1 3 13 13 C 1.34336 * 125.80949 * 35.00336 * 12 2 1 14 14 N 1.38930 * 107.12484 * 179.97438 * 13 12 2 15 15 C 1.37483 * 139.53650 * 179.97438 * 14 13 12 16 16 C 1.30910 * 116.32088 * 180.02562 * 15 14 13 17 17 S 1.75782 * 109.82022 * 359.97438 * 16 15 14 18 18 C 1.35143 * 106.52650 * 0.02562 * 14 13 12 19 19 N 1.32361 * 108.82412 * 359.75321 * 18 14 13 20 20 H 1.08999 * 109.46711 * 54.95159 * 1 2 3 21 21 H 1.09000 * 109.46782 * 174.94118 * 1 2 3 22 22 H 1.08993 * 109.47296 * 294.94778 * 1 2 3 23 23 H 0.96998 * 120.00529 * 355.00153 * 7 6 4 24 24 H 1.07998 * 126.43895 * 359.95509 * 13 12 2 25 25 H 1.08002 * 121.83586 * 359.97438 * 15 14 13 26 26 H 1.08000 * 125.08912 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5798 -1.6365 -1.1336 6 6 1.7932 -0.1784 -2.4796 7 7 2.1416 -0.8474 -3.5569 8 14 0.9746 1.4928 -2.6419 9 1 -0.4986 1.3180 -2.7075 10 1 1.3218 2.3304 -1.4659 11 1 1.4497 2.1584 -3.8814 12 6 2.0323 -0.7104 1.2306 13 6 1.4529 -1.7707 1.8175 14 7 2.2355 -2.1096 2.9142 15 6 2.2670 -3.0344 3.9310 16 6 3.2670 -2.9402 4.7705 17 16 4.3054 -1.5979 4.3124 18 6 3.2614 -1.2303 2.9408 19 7 3.1345 -0.3951 1.9219 20 1 -0.3633 0.5902 -0.8413 21 1 -0.3633 -1.0237 -0.0906 22 1 -0.3633 0.4334 0.9317 23 1 2.6313 -1.6805 -3.4734 24 1 0.5484 -2.2665 1.4972 25 1 1.5079 -3.7960 4.0321 26 1 3.4301 -3.5904 5.6173 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261249004.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:23 Heat of formation + Delta-G solvation = 94.497908 kcal Electronic energy + Delta-G solvation = -12615.867210 eV Core-core repulsion = 10401.824041 eV Total energy + Delta-G solvation = -2214.043169 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.15031 -36.61876 -34.05428 -31.37203 -30.35791 -27.80843 -24.82589 -23.68063 -22.35290 -20.30859 -18.90606 -18.06130 -17.39064 -15.60143 -15.50706 -14.81538 -14.06397 -13.85560 -13.30835 -12.98890 -12.66438 -11.98292 -11.54800 -11.18501 -11.08741 -10.94921 -10.48008 -10.16804 -10.00041 -9.71610 -9.42141 -8.75892 -8.44693 -8.15225 -7.38271 -6.38015 -4.04381 1.12323 1.16023 1.78814 2.55272 2.91749 3.40315 3.50468 3.59473 3.64549 4.52493 4.69077 4.96882 5.19045 5.34166 5.46973 5.77173 6.05559 6.37588 6.44119 6.49980 6.62316 7.01510 7.16002 7.22903 7.50820 8.06311 8.37632 8.41746 8.92363 9.64885 11.00723 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.056034 B = 0.007345 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.572321 B = 3811.137055 C = 3856.918107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.078 3.922 3 H 0.048 0.952 4 C -0.578 4.578 5 H 0.055 0.945 6 C 0.028 3.972 7 N -0.914 5.914 8 Si 1.056 2.944 9 H -0.283 1.283 10 H -0.277 1.277 11 H -0.290 1.290 12 C 0.109 3.891 13 C -0.068 4.068 14 N -0.416 5.416 15 C 0.063 3.937 16 C -0.242 4.242 17 S 0.160 5.840 18 C 0.124 3.876 19 N -0.451 5.451 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.030 0.970 23 H 0.266 0.734 24 H 0.179 0.821 25 H 0.176 0.824 26 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -3.746 16.670 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.058 3.942 3 H 0.066 0.934 4 C -0.616 4.616 5 H 0.073 0.927 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.885 3.115 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.217 1.217 12 C -0.020 4.020 13 C -0.197 4.197 14 N -0.098 5.098 15 C -0.067 4.067 16 C -0.380 4.380 17 S 0.408 5.592 18 C -0.241 4.241 19 N -0.174 5.174 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.196 0.804 25 H 0.193 0.807 26 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.001 -1.529 15.878 15.951 hybrid contribution -1.154 -2.662 0.764 3.001 sum -1.153 -4.192 16.642 17.200 Atomic orbital electron populations 1.22126 0.98019 1.01005 0.98937 1.17829 0.91557 0.96350 0.88465 0.93440 1.21914 1.39505 1.09901 0.90328 0.92705 1.25788 0.96546 1.03463 0.91761 1.70813 1.36981 1.16856 1.30214 0.83844 0.76121 0.75719 0.75768 1.21021 1.20239 1.21675 1.21342 0.90048 0.94430 0.96197 1.22587 1.01981 1.04138 0.90984 1.43900 1.21442 1.23165 1.21280 1.20347 1.01566 0.95696 0.89122 1.24899 1.00184 1.06230 1.06665 1.84428 1.25861 1.29341 1.19595 1.26138 0.96300 0.96860 1.04828 1.70580 1.19400 1.24252 1.03214 0.93245 0.92979 0.95083 0.92366 0.80412 0.80732 0.79293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.25 37.16 0.31 -2.76 15 2 C 0.08 1.96 2.33 -92.92 -0.22 1.74 15 3 H 0.05 1.24 6.65 -51.93 -0.35 0.90 15 4 C -0.58 -16.75 8.90 -34.44 -0.31 -17.05 15 5 H 0.05 1.74 7.97 -52.48 -0.42 1.33 15 6 C 0.03 0.83 5.43 -17.82 -0.10 0.73 15 7 N -0.91 -28.60 13.70 55.43 0.76 -27.84 15 8 Si 1.06 25.82 25.29 -169.99 -4.30 21.52 15 9 H -0.28 -6.45 6.81 56.52 0.38 -6.07 15 10 H -0.28 -6.37 6.36 56.52 0.36 -6.02 15 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 12 C 0.11 2.57 5.93 -83.08 -0.49 2.08 15 13 C -0.07 -1.36 11.19 -15.71 -0.18 -1.54 15 14 N -0.42 -7.41 3.19 -63.77 -0.20 -7.62 15 15 C 0.06 0.79 11.26 -16.71 -0.19 0.60 15 16 C -0.24 -2.55 11.11 29.04 0.32 -2.22 15 17 S 0.16 2.20 23.37 -107.50 -2.51 -0.32 15 18 C 0.12 2.44 8.93 -88.71 -0.79 1.65 15 19 N -0.45 -10.69 11.32 -9.77 -0.11 -10.80 15 20 H 0.05 1.06 4.40 -51.93 -0.23 0.84 15 21 H 0.05 1.06 7.52 -51.93 -0.39 0.67 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.27 8.35 8.72 -40.82 -0.36 7.99 15 24 H 0.18 3.10 7.49 -52.49 -0.39 2.70 15 25 H 0.18 1.51 8.06 -52.49 -0.42 1.09 15 26 H 0.19 1.16 8.06 -52.49 -0.42 0.74 15 LS Contribution 237.47 15.07 3.58 3.58 Total: -1.00 -33.95 237.47 -6.68 -40.63 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -2.25 Total: -2.38 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.64 Total: -16.78 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.45 Total: -46.26 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -4.30 Total: 21.52 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.51 Total: -0.32 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.95 -6.68 -40.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249004.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.132 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds