Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47078 * 2 1 4 4 C 1.50697 * 109.47097 * 239.99505 * 2 1 3 5 5 H 1.08003 * 119.99877 * 245.37631 * 4 2 1 6 6 C 1.37875 * 120.00022 * 65.38196 * 4 2 1 7 7 N 1.31510 * 119.99807 * 185.16074 * 6 4 2 8 8 Si 1.86800 * 119.99860 * 5.16554 * 6 4 2 9 9 H 1.48499 * 109.46834 * 269.99751 * 8 6 4 10 10 H 1.48498 * 109.47224 * 29.99858 * 8 6 4 11 11 H 1.48497 * 109.47062 * 150.00314 * 8 6 4 12 12 C 1.50701 * 109.46592 * 119.99637 * 2 1 3 13 13 C 1.34336 * 125.80949 * 35.00336 * 12 2 1 14 14 N 1.38930 * 107.12484 * 179.97438 * 13 12 2 15 15 C 1.37483 * 139.53650 * 179.97438 * 14 13 12 16 16 C 1.30910 * 116.32088 * 180.02562 * 15 14 13 17 17 S 1.75782 * 109.82022 * 359.97438 * 16 15 14 18 18 C 1.35143 * 106.52650 * 0.02562 * 14 13 12 19 19 N 1.32361 * 108.82412 * 359.75321 * 18 14 13 20 20 H 1.08999 * 109.46711 * 54.95159 * 1 2 3 21 21 H 1.09000 * 109.46782 * 174.94118 * 1 2 3 22 22 H 1.08993 * 109.47296 * 294.94778 * 1 2 3 23 23 H 0.96998 * 120.00529 * 355.00153 * 7 6 4 24 24 H 1.07998 * 126.43895 * 359.95509 * 13 12 2 25 25 H 1.08002 * 121.83586 * 359.97438 * 15 14 13 26 26 H 1.08000 * 125.08912 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5798 -1.6365 -1.1336 6 6 1.7932 -0.1784 -2.4796 7 7 2.1416 -0.8474 -3.5569 8 14 0.9746 1.4928 -2.6419 9 1 -0.4986 1.3180 -2.7075 10 1 1.3218 2.3304 -1.4659 11 1 1.4497 2.1584 -3.8814 12 6 2.0323 -0.7104 1.2306 13 6 1.4529 -1.7707 1.8175 14 7 2.2355 -2.1096 2.9142 15 6 2.2670 -3.0344 3.9310 16 6 3.2670 -2.9402 4.7705 17 16 4.3054 -1.5979 4.3124 18 6 3.2614 -1.2303 2.9408 19 7 3.1345 -0.3951 1.9219 20 1 -0.3633 0.5902 -0.8413 21 1 -0.3633 -1.0237 -0.0906 22 1 -0.3633 0.4334 0.9317 23 1 2.6313 -1.6805 -3.4734 24 1 0.5484 -2.2665 1.4972 25 1 1.5079 -3.7960 4.0321 26 1 3.4301 -3.5904 5.6173 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261249004.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = 71.122124 kcal Electronic energy + Delta-G solvation = -12616.880860 eV Core-core repulsion = 10401.824041 eV Total energy + Delta-G solvation = -2215.056819 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.54894 -38.01141 -35.92293 -33.43601 -31.68054 -29.29052 -26.82262 -24.94508 -24.12052 -21.58653 -20.65774 -19.56545 -19.26080 -17.00320 -16.79907 -16.26176 -15.60969 -15.32974 -15.03661 -14.57301 -14.13979 -13.89648 -13.23055 -12.83091 -12.61302 -12.33865 -12.22995 -11.77410 -11.58806 -11.46414 -11.06579 -10.87451 -10.64408 -9.67574 -8.74992 -8.62435 -6.40163 -0.11293 0.02613 0.75665 1.31253 1.44193 1.57284 1.69322 1.74442 1.96006 2.48362 3.09068 3.48611 3.79424 4.17299 4.38503 4.52132 4.62158 4.62720 4.81977 4.88750 5.10867 5.20329 5.50941 5.61073 5.95684 5.99358 6.04359 6.51559 6.84803 7.38358 8.64171 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.056034 B = 0.007345 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.572321 B = 3811.137055 C = 3856.918107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.078 3.922 3 H 0.030 0.970 4 C -0.577 4.577 5 H 0.007 0.993 6 C -0.023 4.023 7 N -0.944 5.944 8 Si 1.095 2.905 9 H -0.249 1.249 10 H -0.258 1.258 11 H -0.292 1.292 12 C 0.064 3.936 13 C -0.061 4.061 14 N -0.415 5.415 15 C 0.030 3.970 16 C -0.201 4.201 17 S 0.187 5.813 18 C 0.098 3.902 19 N -0.512 5.512 20 H 0.049 0.951 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.249 0.751 24 H 0.200 0.800 25 H 0.218 0.782 26 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 -4.364 19.689 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.048 0.952 4 C -0.615 4.615 5 H 0.025 0.975 6 C -0.219 4.219 7 N -0.581 5.581 8 Si 0.916 3.084 9 H -0.174 1.174 10 H -0.183 1.183 11 H -0.219 1.219 12 C -0.066 4.066 13 C -0.192 4.192 14 N -0.095 5.095 15 C -0.097 4.097 16 C -0.338 4.338 17 S 0.434 5.566 18 C -0.267 4.267 19 N -0.237 5.237 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.217 0.783 25 H 0.234 0.766 26 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.174 -2.193 18.953 19.116 hybrid contribution -0.606 -2.629 0.053 2.698 sum -1.780 -4.822 19.007 19.690 Atomic orbital electron populations 1.21975 0.94925 1.01787 1.00516 1.17671 0.93970 0.94858 0.87734 0.95231 1.22040 1.38388 1.08289 0.92784 0.97498 1.27300 0.96749 1.06499 0.91361 1.70948 1.38959 1.16879 1.31325 0.83406 0.77300 0.71456 0.76244 1.17383 1.18316 1.21911 1.21167 0.91679 0.96690 0.97054 1.22690 1.02308 1.02972 0.91204 1.44125 1.20247 1.23615 1.21516 1.21115 1.03982 0.96221 0.88365 1.25651 0.97363 1.04183 1.06603 1.84418 1.25235 1.30419 1.16514 1.26995 0.97948 0.96469 1.05284 1.70394 1.20566 1.27111 1.05604 0.93233 0.92340 0.92066 0.94243 0.78313 0.76578 0.73814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.25 71.98 0.59 -5.00 15 2 C 0.08 3.98 2.33 -12.28 -0.03 3.95 15 3 H 0.03 1.58 6.65 -2.39 -0.02 1.57 15 4 C -0.58 -34.89 8.90 25.60 0.23 -34.66 15 5 H 0.01 0.45 7.97 -2.91 -0.02 0.43 15 6 C -0.02 -1.38 5.43 84.65 0.46 -0.92 15 7 N -0.94 -61.43 13.70 21.45 0.29 -61.14 15 8 Si 1.09 52.01 25.29 68.60 1.73 53.74 15 9 H -0.25 -10.46 6.81 99.48 0.68 -9.78 15 10 H -0.26 -11.44 6.36 99.48 0.63 -10.81 15 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 15 12 C 0.06 3.06 5.93 41.36 0.25 3.31 15 13 C -0.06 -2.40 11.19 82.67 0.93 -1.48 15 14 N -0.41 -14.06 3.19 -355.67 -1.13 -15.19 15 15 C 0.03 0.62 11.26 83.86 0.94 1.57 15 16 C -0.20 -3.19 11.11 67.87 0.75 -2.43 15 17 S 0.19 4.64 23.37 -56.49 -1.32 3.32 15 18 C 0.10 3.81 8.93 179.68 1.60 5.42 15 19 N -0.51 -24.98 11.32 -184.82 -2.09 -27.07 15 20 H 0.05 2.03 4.40 -2.39 -0.01 2.02 15 21 H 0.06 2.31 7.52 -2.39 -0.02 2.30 15 22 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.25 16.53 8.72 -92.71 -0.81 15.72 15 24 H 0.20 6.68 7.49 -2.91 -0.02 6.65 15 25 H 0.22 2.59 8.06 -2.91 -0.02 2.56 15 26 H 0.25 1.13 8.06 -2.91 -0.02 1.11 15 Total: -1.00 -80.15 237.47 4.26 -75.88 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.05 Total: 0.71 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 5.73 Total: -30.25 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -2.93 Total: -103.40 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 1.73 Total: 53.74 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.32 Total: 3.32 kcal Total: -80.15 4.26 -75.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249004.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.007 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds