Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 C 1.50694 * 109.47376 * 239.99246 * 2 1 3 5 5 H 1.08001 * 120.00199 * 240.00682 * 4 2 1 6 6 C 1.37877 * 119.99757 * 59.99619 * 4 2 1 7 7 N 1.31508 * 120.00034 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46690 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47223 * 120.00341 * 8 6 4 11 11 H 1.48504 * 109.47339 * 240.01037 * 8 6 4 12 12 C 1.50706 * 109.46800 * 119.99469 * 2 1 3 13 13 N 1.30381 * 125.56847 * 60.04134 * 12 2 1 14 14 C 1.33760 * 109.48762 * 179.97438 * 13 12 2 15 15 C 1.36264 * 107.82285 * 359.97438 * 14 13 12 16 16 S 1.75987 * 143.24253 * 179.97438 * 15 14 13 17 17 C 1.75802 * 90.73283 * 180.02562 * 16 15 14 18 18 C 1.30868 * 109.98096 * 0.21049 * 17 16 15 19 19 N 1.36066 * 107.43457 * 0.02562 * 15 14 13 20 20 H 1.08998 * 109.47112 * 300.00716 * 1 2 3 21 21 H 1.09000 * 109.46925 * 60.00093 * 1 2 3 22 22 H 1.08997 * 109.47423 * 180.02562 * 1 2 3 23 23 H 0.97004 * 120.00008 * 179.97438 * 7 6 4 24 24 H 1.08002 * 126.08480 * 179.97438 * 14 13 12 25 25 H 1.07999 * 125.00581 * 179.97438 * 17 16 15 26 26 H 1.07999 * 121.79668 * 179.70875 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6993 -0.2397 -2.4826 7 7 0.9435 0.8298 -2.6034 8 14 2.3214 -1.1208 -4.0078 9 1 3.1455 -2.2880 -3.6034 10 1 1.1661 -1.5872 -4.8158 11 1 3.1467 -0.1879 -4.8164 12 6 2.0323 -0.7103 1.2306 13 7 1.7857 -1.9518 1.5434 14 6 2.3890 -2.2489 2.6997 15 6 3.0448 -1.1334 3.1266 16 16 4.0590 -0.5020 4.4188 17 6 4.1289 1.0666 3.6281 18 6 3.4348 1.0396 2.5190 19 7 2.8265 -0.1550 2.2067 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.7095 1.1613 -3.4845 24 1 2.3612 -3.2031 3.2049 25 1 4.6626 1.9269 4.0043 26 1 3.3450 1.9076 1.8826 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259317.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = 87.622556 kcal Electronic energy + Delta-G solvation = -12740.667555 eV Core-core repulsion = 10526.326249 eV Total energy + Delta-G solvation = -2214.341306 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.03929 -36.17323 -34.29941 -31.05250 -29.91426 -27.76663 -25.20829 -23.28397 -22.22187 -20.90461 -19.11372 -17.54746 -16.23560 -15.42898 -15.23723 -14.60960 -14.37605 -13.71142 -12.93161 -12.79524 -12.45904 -11.84272 -11.43725 -11.06375 -10.96382 -10.79827 -10.47857 -10.22495 -9.93754 -9.68248 -9.56621 -9.11352 -8.74050 -8.46692 -6.82462 -6.09490 -4.15461 1.39584 1.58015 2.03746 2.68287 3.17209 3.27996 3.35926 3.42691 3.75097 4.40533 4.98593 5.21360 5.30684 5.40760 5.45529 5.80729 6.04077 6.52174 6.73136 6.88839 7.00082 7.06531 7.49643 7.67384 7.79550 7.98946 8.21210 8.66743 8.86289 9.48975 10.96486 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.044516 B = 0.007938 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.829349 B = 3526.659605 C = 3583.704605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.121 3.879 3 H 0.039 0.961 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.289 3.711 13 N -0.456 5.456 14 C 0.016 3.984 15 C -0.120 4.120 16 S 0.085 5.915 17 C -0.234 4.234 18 C 0.077 3.923 19 N -0.420 5.420 20 H 0.007 0.993 21 H 0.092 0.908 22 H 0.042 0.958 23 H 0.262 0.738 24 H 0.171 0.829 25 H 0.183 0.817 26 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 1.365 10.674 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.100 3.900 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.026 3.974 13 N -0.170 5.170 14 C -0.141 4.141 15 C -0.342 4.342 16 S 0.339 5.661 17 C -0.371 4.371 18 C -0.052 4.052 19 N -0.100 5.100 20 H 0.026 0.974 21 H 0.111 0.889 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.188 0.812 25 H 0.200 0.800 26 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.804 0.493 11.254 12.247 hybrid contribution 0.352 0.728 -1.497 1.701 sum 5.156 1.221 9.757 11.103 Atomic orbital electron populations 1.21743 0.95934 1.00628 1.00349 1.17522 0.93668 0.94131 0.84671 0.94259 1.20985 1.31452 1.12469 0.89007 0.91923 1.24915 0.94936 0.95004 0.99022 1.69877 1.36644 1.22891 1.23671 0.86388 0.78702 0.79684 0.82432 1.19630 1.20779 1.21021 1.25285 0.91582 0.88882 0.91636 1.70250 1.22832 1.11528 1.12352 1.21795 1.00548 0.96751 0.94986 1.24251 1.14098 0.96641 0.99171 1.84057 1.54946 1.04014 1.23120 1.24798 1.09358 1.03000 0.99963 1.20508 0.96431 0.90040 0.98266 1.44435 1.37935 1.08476 1.19130 0.97388 0.88931 0.93885 0.92778 0.81193 0.79991 0.80433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.95 37.16 0.33 -2.80 15 2 C 0.12 3.05 2.77 -92.92 -0.26 2.79 15 3 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 4 C -0.50 -13.81 8.55 -34.44 -0.29 -14.10 15 5 H 0.06 1.80 7.74 -52.49 -0.41 1.39 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.62 11.32 55.43 0.63 -23.99 15 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 15 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 12 C 0.29 6.77 6.63 -153.18 -1.02 5.76 15 13 N -0.46 -10.67 11.21 -9.97 -0.11 -10.78 15 14 C 0.02 0.32 11.93 -17.42 -0.21 0.11 15 15 C -0.12 -2.26 7.83 -16.38 -0.13 -2.39 15 16 S 0.08 1.21 23.36 -107.50 -2.51 -1.30 15 17 C -0.23 -3.08 11.10 29.05 0.32 -2.76 15 18 C 0.08 1.23 11.26 -16.62 -0.19 1.04 15 19 N -0.42 -8.51 3.19 -59.70 -0.19 -8.70 15 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 15 21 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 22 H 0.04 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.26 6.87 8.31 -40.82 -0.34 6.54 15 24 H 0.17 2.72 8.06 -52.49 -0.42 2.30 15 25 H 0.18 1.65 8.06 -52.49 -0.42 1.23 15 26 H 0.18 2.47 8.06 -52.49 -0.42 2.05 15 LS Contribution 244.98 15.07 3.69 3.69 Total: -1.00 -30.02 244.98 -7.44 -37.46 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -2.39 Total: -1.90 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.53 Total: -10.73 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.33 Total: -43.47 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.02 -7.44 -37.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259317.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.082 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds