Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 C 1.50694 * 109.47376 * 239.99246 * 2 1 3 5 5 H 1.08001 * 120.00199 * 240.00682 * 4 2 1 6 6 C 1.37877 * 119.99757 * 59.99619 * 4 2 1 7 7 N 1.31508 * 120.00034 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46690 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47223 * 120.00341 * 8 6 4 11 11 H 1.48504 * 109.47339 * 240.01037 * 8 6 4 12 12 C 1.50706 * 109.46800 * 119.99469 * 2 1 3 13 13 N 1.30381 * 125.56847 * 60.04134 * 12 2 1 14 14 C 1.33760 * 109.48762 * 179.97438 * 13 12 2 15 15 C 1.36264 * 107.82285 * 359.97438 * 14 13 12 16 16 S 1.75987 * 143.24253 * 179.97438 * 15 14 13 17 17 C 1.75802 * 90.73283 * 180.02562 * 16 15 14 18 18 C 1.30868 * 109.98096 * 0.21049 * 17 16 15 19 19 N 1.36066 * 107.43457 * 0.02562 * 15 14 13 20 20 H 1.08998 * 109.47112 * 300.00716 * 1 2 3 21 21 H 1.09000 * 109.46925 * 60.00093 * 1 2 3 22 22 H 1.08997 * 109.47423 * 180.02562 * 1 2 3 23 23 H 0.97004 * 120.00008 * 179.97438 * 7 6 4 24 24 H 1.08002 * 126.08480 * 179.97438 * 14 13 12 25 25 H 1.07999 * 125.00581 * 179.97438 * 17 16 15 26 26 H 1.07999 * 121.79668 * 179.70875 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6993 -0.2397 -2.4826 7 7 0.9435 0.8298 -2.6034 8 14 2.3214 -1.1208 -4.0078 9 1 3.1455 -2.2880 -3.6034 10 1 1.1661 -1.5872 -4.8158 11 1 3.1467 -0.1879 -4.8164 12 6 2.0323 -0.7103 1.2306 13 7 1.7857 -1.9518 1.5434 14 6 2.3890 -2.2489 2.6997 15 6 3.0448 -1.1334 3.1266 16 16 4.0590 -0.5020 4.4188 17 6 4.1289 1.0666 3.6281 18 6 3.4348 1.0396 2.5190 19 7 2.8265 -0.1550 2.2067 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.7095 1.1613 -3.4845 24 1 2.3612 -3.2031 3.2049 25 1 4.6626 1.9269 4.0043 26 1 3.3450 1.9076 1.8826 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259317.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = 70.143088 kcal Electronic energy + Delta-G solvation = -12741.425522 eV Core-core repulsion = 10526.326249 eV Total energy + Delta-G solvation = -2215.099273 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.52902 -37.59568 -36.23657 -33.01581 -31.27661 -29.39373 -27.29114 -24.70413 -23.94169 -22.40859 -20.60075 -19.07413 -18.22935 -16.95507 -16.75860 -16.46649 -15.56522 -15.11606 -14.76677 -14.42848 -14.01141 -13.63745 -13.15529 -12.88300 -12.61664 -12.50395 -12.25797 -12.13716 -11.84395 -11.30037 -11.11404 -10.91690 -10.54094 -10.21926 -8.24996 -8.06796 -6.29508 0.08812 0.27895 0.80501 1.29342 1.39889 1.42690 1.54408 1.79960 2.12246 2.44142 3.11752 3.71435 3.76457 4.09342 4.35168 4.48618 4.63097 4.74780 4.92743 5.05342 5.21083 5.44384 5.53866 5.75797 5.87423 6.13944 6.27634 6.72830 7.08005 7.37701 8.88755 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.044516 B = 0.007938 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.829349 B = 3526.659605 C = 3583.704605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.125 3.875 3 H 0.026 0.974 4 C -0.519 4.519 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.273 1.273 12 C 0.245 3.755 13 N -0.485 5.485 14 C -0.011 4.011 15 C -0.127 4.127 16 S 0.150 5.850 17 C -0.195 4.195 18 C 0.023 3.977 19 N -0.421 5.421 20 H 0.023 0.977 21 H 0.074 0.926 22 H 0.029 0.971 23 H 0.267 0.733 24 H 0.199 0.801 25 H 0.233 0.767 26 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 1.933 12.223 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 H 0.044 0.956 4 C -0.558 4.558 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.198 1.198 12 C -0.018 4.018 13 N -0.200 5.200 14 C -0.168 4.168 15 C -0.350 4.350 16 S 0.404 5.596 17 C -0.331 4.331 18 C -0.104 4.104 19 N -0.100 5.100 20 H 0.042 0.958 21 H 0.093 0.907 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.216 0.784 25 H 0.250 0.750 26 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.373 1.094 12.815 14.354 hybrid contribution -0.012 0.593 -1.761 1.858 sum 6.361 1.686 11.054 12.865 Atomic orbital electron populations 1.21548 0.95985 0.99611 1.00116 1.17230 0.93669 0.93319 0.85313 0.95602 1.21101 1.31792 1.12212 0.90702 0.94024 1.25598 0.95011 0.95651 1.01413 1.69957 1.36982 1.23588 1.24479 0.85487 0.78317 0.78536 0.79203 1.20217 1.20072 1.19835 1.24583 0.94930 0.89530 0.92758 1.70086 1.23773 1.11989 1.14134 1.22272 1.01383 0.98552 0.94632 1.24960 1.13595 0.96178 1.00229 1.83950 1.52114 1.03433 1.20062 1.25491 1.06111 1.03858 0.97677 1.20953 0.99155 0.89628 1.00665 1.44491 1.37095 1.09967 1.18443 0.95783 0.90724 0.95139 0.92390 0.78412 0.75043 0.79261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 8.95 71.98 0.64 -5.13 15 2 C 0.13 6.56 2.77 -12.29 -0.03 6.53 15 3 H 0.03 1.39 8.14 -2.39 -0.02 1.37 15 4 C -0.52 -29.67 8.55 25.60 0.22 -29.45 15 5 H 0.04 2.49 7.74 -2.91 -0.02 2.47 15 6 C 0.02 1.26 5.30 84.66 0.45 1.71 15 7 N -0.91 -51.05 11.32 21.45 0.24 -50.81 15 8 Si 0.96 44.13 29.54 68.60 2.03 46.16 15 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 12 C 0.25 11.82 6.63 137.35 0.91 12.73 15 13 N -0.48 -23.33 11.21 -185.46 -2.08 -25.41 15 14 C -0.01 -0.45 11.93 83.94 1.00 0.56 15 15 C -0.13 -4.60 7.83 83.58 0.65 -3.94 15 16 S 0.15 3.69 23.36 -56.49 -1.32 2.37 15 17 C -0.19 -4.27 11.10 67.92 0.75 -3.52 15 18 C 0.02 0.70 11.26 83.88 0.94 1.64 15 19 N -0.42 -16.90 3.19 -342.78 -1.09 -17.99 15 20 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.07 4.01 6.07 -2.39 -0.01 3.99 15 22 H 0.03 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.27 14.05 8.31 -92.71 -0.77 13.28 15 24 H 0.20 6.19 8.06 -2.91 -0.02 6.16 15 25 H 0.23 2.70 8.06 -2.91 -0.02 2.68 15 26 H 0.19 5.09 8.06 -2.91 -0.02 5.06 15 Total: -1.00 -66.54 244.98 4.51 -62.03 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.18 Total: 2.53 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 5.54 Total: -18.88 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -2.93 Total: -94.21 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.32 Total: 2.37 kcal Total: -66.54 4.51 -62.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259317.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.173 kcal (2) G-P(sol) polarization free energy of solvation -66.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds