Wall clock time and date at job start Mon Mar 30 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30784 * 1 3 3 Si 1.86796 * 120.00092 * 2 1 4 4 H 1.48501 * 109.47456 * 274.99024 * 3 2 1 5 5 H 1.48499 * 109.46995 * 34.99080 * 3 2 1 6 6 H 1.48498 * 109.46759 * 154.98893 * 3 2 1 7 7 C 1.40149 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99420 * 186.60450 * 7 2 1 9 9 C 1.39911 * 120.00500 * 6.60579 * 7 2 1 10 10 C 1.36966 * 124.83217 * 173.26505 * 9 7 2 11 11 C 1.39742 * 115.02816 * 180.02562 * 10 9 7 12 12 C 1.40339 * 112.90704 * 359.97438 * 11 10 9 13 13 C 1.39564 * 119.87374 * 180.02562 * 12 11 10 14 14 C 1.37728 * 120.48978 * 0.02562 * 13 12 11 15 15 C 1.38848 * 120.27892 * 359.95469 * 14 13 12 16 16 C 1.37229 * 120.47329 * 0.06662 * 15 14 13 17 17 F 1.35098 * 119.84966 * 180.23526 * 16 15 14 18 18 S 1.75452 * 124.82914 * 353.30400 * 9 7 2 19 19 H 0.96997 * 120.00156 * 359.97438 * 1 2 3 20 20 H 1.07995 * 122.48345 * 0.03642 * 10 9 7 21 21 H 1.07995 * 119.75613 * 179.97438 * 13 12 11 22 22 H 1.08003 * 119.85878 * 180.02562 * 14 13 12 23 23 H 1.07996 * 119.76872 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3839 2.1073 -1.3947 5 1 1.4960 2.6199 0.8029 6 1 3.5881 1.4119 0.5919 7 6 2.0085 -1.2138 -0.0005 8 1 3.0832 -1.2169 0.1070 9 6 1.3159 -2.4214 -0.1405 10 6 1.9055 -3.6491 -0.2857 11 6 1.0171 -4.7206 -0.4098 12 6 -0.3280 -4.3235 -0.3600 13 6 -1.3394 -5.2790 -0.4697 14 6 -1.0279 -6.6114 -0.6261 15 6 0.2984 -7.0190 -0.6774 16 6 1.3131 -6.1012 -0.5718 17 9 2.5991 -6.5112 -0.6281 18 16 -0.4315 -2.5784 -0.1558 19 1 -0.4850 0.8400 0.0004 20 1 2.9774 -3.7793 -0.3028 21 1 -2.3738 -4.9714 -0.4307 22 1 -1.8187 -7.3422 -0.7103 23 1 0.5332 -8.0659 -0.8007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262955.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:18 Heat of formation + Delta-G solvation = -36.396644 kcal Electronic energy + Delta-G solvation = -12130.344459 eV Core-core repulsion = 9754.872220 eV Total energy + Delta-G solvation = -2375.472239 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.80798 -37.91109 -35.05880 -33.20735 -29.37059 -29.05112 -25.47796 -22.61230 -21.37569 -19.39851 -18.08835 -16.66932 -15.61651 -15.21546 -14.81373 -14.58522 -14.10835 -13.47907 -13.16583 -12.27189 -12.17396 -11.82650 -11.69156 -11.60444 -11.20939 -10.62255 -10.43389 -10.39686 -10.01655 -9.46865 -9.18080 -8.33163 -7.51729 -7.28253 -6.46257 -4.76247 1.89865 2.19848 2.75455 2.81096 2.87703 3.16016 3.47644 3.51883 3.73077 4.49208 4.91779 5.36399 5.66682 5.80232 6.07937 6.49198 6.58564 6.72229 6.86599 7.10111 7.23106 7.30858 7.40783 7.60303 7.81417 7.97951 8.19478 8.31377 9.56393 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.050434 B = 0.008844 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.047984 B = 3165.379319 C = 3707.027189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.053 3.947 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.379 4.379 8 H 0.101 0.899 9 C 0.055 3.945 10 C -0.358 4.358 11 C -0.006 4.006 12 C -0.251 4.251 13 C -0.059 4.059 14 C -0.178 4.178 15 C -0.141 4.141 16 C 0.047 3.953 17 F -0.157 7.157 18 S 0.148 5.852 19 H 0.303 0.697 20 H 0.110 0.890 21 H 0.108 0.892 22 H 0.113 0.887 23 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -0.619 -0.229 1.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.169 4.169 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.413 4.413 8 H 0.119 0.881 9 C -0.064 4.064 10 C -0.383 4.383 11 C -0.015 4.015 12 C -0.366 4.366 13 C -0.082 4.082 14 C -0.199 4.199 15 C -0.162 4.162 16 C 0.026 3.974 17 F -0.136 7.136 18 S 0.409 5.591 19 H 0.116 0.884 20 H 0.128 0.872 21 H 0.126 0.874 22 H 0.131 0.869 23 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.872 0.558 -0.100 2.927 hybrid contribution 1.753 -0.502 -0.168 1.831 sum -1.119 0.056 -0.267 1.152 Atomic orbital electron populations 1.68654 1.07838 1.31260 1.32217 1.26355 0.95151 1.03137 0.92282 0.85705 0.80208 0.78060 0.79690 1.18751 1.19479 1.17890 1.19379 0.96281 0.88668 1.36985 0.88086 1.21419 0.94819 0.95767 0.94412 1.19539 0.98026 0.90449 1.30266 1.17971 0.93271 0.91520 0.98730 1.23565 0.95369 1.02800 1.14816 1.20213 0.96836 0.91920 0.99218 1.20260 0.94713 0.95180 1.09726 1.20437 0.92681 0.97852 1.05224 1.17653 0.77626 0.91824 1.10290 1.91340 1.36728 1.90924 1.94590 1.84793 1.05291 0.92036 1.76976 0.88420 0.87230 0.87441 0.86931 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.67 10.63 55.56 0.59 -17.08 14 2 C 0.05 1.18 5.49 -17.28 -0.09 1.08 14 3 Si 0.94 16.60 29.57 -169.99 -5.03 11.58 14 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 14 5 H -0.27 -4.61 7.11 56.52 0.40 -4.21 14 6 H -0.26 -4.47 7.11 56.52 0.40 -4.07 14 7 C -0.38 -9.32 9.26 -38.24 -0.35 -9.67 14 8 H 0.10 2.35 7.86 -52.48 -0.41 1.94 14 9 C 0.06 1.44 6.11 -39.42 -0.24 1.20 14 10 C -0.36 -9.42 10.06 -39.48 -0.40 -9.82 14 11 C -0.01 -0.15 5.86 -107.05 -0.63 -0.78 14 12 C -0.25 -6.04 6.47 -38.30 -0.25 -6.29 14 13 C -0.06 -1.24 10.05 -39.27 -0.39 -1.63 14 14 C -0.18 -3.40 10.03 -39.54 -0.40 -3.80 14 15 C -0.14 -2.84 9.97 -39.72 -0.40 -3.23 14 16 C 0.05 1.09 7.38 -38.46 -0.28 0.81 14 17 F -0.16 -3.61 17.18 2.25 0.04 -3.57 14 18 S 0.15 3.61 20.16 -107.50 -2.17 1.44 14 19 H 0.30 6.12 8.29 -40.82 -0.34 5.78 14 20 H 0.11 2.83 8.06 -52.49 -0.42 2.40 14 21 H 0.11 1.95 8.06 -52.49 -0.42 1.53 14 22 H 0.11 1.75 8.06 -52.48 -0.42 1.33 14 23 H 0.11 1.95 8.06 -52.49 -0.42 1.52 14 LS Contribution 227.91 15.07 3.43 3.43 Total: -1.00 -26.50 227.91 -7.80 -34.30 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -1.24 Total: 2.02 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -3.43 Total: -32.13 kcal Atomic # 7 Polarization: -17.67 SS G_CDS: 0.59 Total: -17.08 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.17 Total: 1.44 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.50 -7.80 -34.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262955.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.097 kcal (2) G-P(sol) polarization free energy of solvation -26.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds