Wall clock time and date at job start Mon Mar 30 2020 03:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32618 * 124.80879 * 2 1 4 4 C 1.40180 * 115.60264 * 180.02562 * 3 2 1 5 5 C 1.37505 * 113.01520 * 359.97438 * 4 3 2 6 6 S 1.75622 * 124.80948 * 180.02562 * 2 1 3 7 7 C 1.47034 * 107.27543 * 180.22320 * 5 4 3 8 8 C 1.41074 * 126.39006 * 179.97438 * 7 5 4 9 9 H 1.07996 * 120.00427 * 359.97438 * 8 7 5 10 10 C 1.39840 * 119.99672 * 180.02562 * 8 7 5 11 11 N 1.30919 * 120.00214 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99680 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47055 * 60.00087 * 12 10 8 14 14 H 1.48507 * 109.46589 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47273 * 299.99537 * 12 10 8 16 16 N 1.32701 * 107.21884 * 359.67465 * 7 5 4 17 17 N 1.38945 * 139.98186 * 180.02562 * 4 3 2 18 18 C 1.46504 * 125.33860 * 359.94748 * 17 4 3 19 19 H 1.08989 * 109.47200 * 90.00067 * 1 2 3 20 20 H 1.09002 * 109.46557 * 209.99934 * 1 2 3 21 21 H 1.08994 * 109.46605 * 329.99305 * 1 2 3 22 22 H 1.08002 * 122.19577 * 0.02837 * 3 2 1 23 23 H 0.97003 * 120.00138 * 180.02562 * 11 10 8 24 24 H 1.09010 * 109.47003 * 89.99894 * 18 17 4 25 25 H 1.08993 * 109.47592 * 210.00079 * 18 17 4 26 26 H 1.09003 * 109.47262 * 330.01040 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2641 1.0889 0.0000 4 6 3.6479 0.8646 -0.0006 5 6 3.9761 -0.4707 -0.0005 6 16 2.5096 -1.4420 -0.0006 7 6 5.4437 -0.5596 0.0044 8 6 6.2105 -1.7438 0.0066 9 1 5.7190 -2.7054 0.0051 10 6 7.6070 -1.6724 0.0118 11 7 8.2029 -0.5066 0.0141 12 14 8.6224 -3.2404 0.0154 13 1 8.3083 -4.0362 -1.1983 14 1 10.0666 -2.8948 0.0202 15 1 8.2994 -4.0364 1.2266 16 7 5.9125 0.6819 -0.0003 17 7 4.8412 1.5763 -0.0004 18 6 4.9568 3.0368 -0.0005 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3632 -0.8900 0.5138 21 1 -0.3632 0.8899 0.5139 22 1 1.8422 2.0831 0.0005 23 1 9.1717 -0.4571 0.0173 24 1 4.9853 3.3991 1.0272 25 1 5.8727 3.3288 -0.5142 26 1 4.0983 3.4692 -0.5144 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272890.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:38 Heat of formation + Delta-G solvation = 85.836283 kcal Electronic energy + Delta-G solvation = -12545.476724 eV Core-core repulsion = 10331.057959 eV Total energy + Delta-G solvation = -2214.418765 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.16135 -35.23461 -33.50926 -31.31691 -29.98713 -27.08486 -25.33593 -24.16292 -21.36066 -19.68678 -18.32751 -17.06673 -15.83340 -14.80122 -14.26116 -14.23398 -13.82801 -13.31531 -12.92158 -12.69244 -12.09430 -11.95023 -11.86107 -11.30232 -11.16058 -10.89024 -10.48466 -10.19533 -10.11291 -9.89639 -9.21303 -8.65421 -8.26630 -7.21294 -6.67339 -6.45744 -4.36090 1.85123 2.41896 3.04667 3.12315 3.18237 3.21519 3.68724 4.02853 4.13222 4.19170 5.25348 5.50567 5.55373 5.62402 5.75238 5.92453 5.97699 5.99087 6.12783 6.26507 6.64454 6.71869 7.11819 7.24164 7.51783 8.28380 8.48504 8.80311 9.06382 9.79788 10.51068 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.009751 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.034738 B = 2870.933893 C = 3660.518587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.182 4.182 3 C -0.119 4.119 4 C 0.068 3.932 5 C -0.288 4.288 6 S 0.103 5.897 7 C 0.256 3.744 8 C -0.440 4.440 9 H 0.082 0.918 10 C 0.072 3.928 11 N -0.770 5.770 12 Si 0.913 3.087 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.266 1.266 16 N -0.297 5.297 17 N -0.418 5.418 18 C 0.129 3.871 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.123 0.877 23 H 0.274 0.726 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.252 1.812 -0.110 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.301 4.301 3 C -0.155 4.155 4 C -0.056 4.056 5 C -0.415 4.415 6 S 0.361 5.639 7 C 0.099 3.901 8 C -0.480 4.480 9 H 0.101 0.899 10 C -0.148 4.148 11 N -0.398 5.398 12 Si 0.737 3.263 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.191 1.191 16 N -0.122 5.122 17 N -0.205 5.205 18 C -0.015 4.015 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.087 0.913 22 H 0.141 0.859 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.293 1.354 -0.113 8.404 hybrid contribution 0.170 0.576 0.016 0.601 sum -8.123 1.929 -0.097 8.349 Atomic orbital electron populations 1.20228 0.88500 1.02390 1.02023 1.23906 0.99075 0.96415 1.10741 1.18747 0.89854 0.98622 1.08271 1.18894 0.88784 0.91613 1.06336 1.24646 0.98507 0.94431 1.23904 1.83170 0.94959 1.07141 1.78628 1.19858 0.84152 0.92722 0.93411 1.18515 0.90323 0.91078 1.48106 0.89941 1.25806 0.98265 0.97286 0.93454 1.69942 1.10458 1.24675 1.34687 0.86304 0.78328 0.81939 0.79691 1.19108 1.20514 1.19104 1.78509 1.02078 0.97020 1.34640 1.48675 1.01131 1.04753 1.65945 1.21241 1.02001 0.77553 1.00746 0.91394 0.91636 0.91334 0.85923 0.91513 0.93491 0.90735 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.35 36.01 0.37 -0.53 15 2 C -0.18 -3.22 6.45 -36.20 -0.23 -3.45 15 3 C -0.12 -2.30 10.02 -40.75 -0.41 -2.71 15 4 C 0.07 1.63 7.25 -84.18 -0.61 1.02 15 5 C -0.29 -7.41 7.46 -36.28 -0.27 -7.68 15 6 S 0.10 2.10 23.29 -107.50 -2.50 -0.40 15 7 C 0.26 7.48 6.93 -82.85 -0.57 6.91 15 8 C -0.44 -12.54 9.42 -37.91 -0.36 -12.90 15 9 H 0.08 2.21 7.84 -52.49 -0.41 1.80 15 10 C 0.07 1.95 5.49 -17.34 -0.10 1.86 15 11 N -0.77 -21.82 11.95 55.54 0.66 -21.16 15 12 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 15 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 16 N -0.30 -8.70 10.73 33.32 0.36 -8.35 15 17 N -0.42 -10.44 4.09 -65.62 -0.27 -10.71 15 18 C 0.13 2.41 11.45 59.85 0.69 3.10 15 19 H 0.07 0.76 8.14 -51.94 -0.42 0.33 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.07 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.12 1.98 8.06 -52.49 -0.42 1.55 15 23 H 0.27 7.09 8.30 -40.82 -0.34 6.75 15 24 H 0.05 0.81 8.14 -51.92 -0.42 0.38 15 25 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 LS Contribution 248.81 15.07 3.75 3.75 Total: -1.00 -32.59 248.81 -7.02 -39.61 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -2.51 Total: -3.15 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.49 Total: -14.39 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.75 Total: -40.21 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.50 Total: -0.40 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.59 -7.02 -39.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272890.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.444 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds