Wall clock time and date at job start Mon Mar 30 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34438 * 125.53205 * 2 1 4 4 C 1.40863 * 107.66608 * 179.97438 * 3 2 1 5 5 C 1.35200 * 107.15080 * 0.02684 * 4 3 2 6 6 S 1.77213 * 144.62520 * 180.02562 * 5 4 3 7 7 C 1.77737 * 95.84656 * 179.97438 * 6 5 4 8 8 C 1.40035 * 128.04887 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99521 * 180.02562 * 8 7 6 10 10 C 1.39532 * 119.99866 * 0.02620 * 8 7 6 11 11 N 1.31283 * 120.00268 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99728 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47307 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47124 * 119.99654 * 12 10 8 15 15 H 1.48504 * 109.47207 * 239.99717 * 12 10 8 16 16 C 1.38860 * 103.90120 * 0.25768 * 7 6 5 17 17 N 1.37703 * 120.92368 * 179.73705 * 16 7 6 18 18 N 1.36934 * 109.64379 * 359.97214 * 5 4 3 19 19 H 1.08996 * 109.47241 * 270.00773 * 1 2 3 20 20 H 1.09002 * 109.46503 * 30.00567 * 1 2 3 21 21 H 1.08994 * 109.47350 * 149.99942 * 1 2 3 22 22 H 1.07993 * 126.17201 * 359.97438 * 3 2 1 23 23 H 1.07997 * 126.42515 * 180.02562 * 4 3 2 24 24 H 0.96998 * 120.00141 * 180.02562 * 11 10 8 25 25 H 0.97002 * 120.00137 * 0.03192 * 17 16 7 26 26 H 0.97008 * 120.00165 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2883 1.0940 0.0000 4 6 3.6290 0.6619 0.0006 5 6 3.6121 -0.6900 0.0003 6 16 4.6200 -2.1477 0.0010 7 6 3.2686 -3.3021 0.0003 8 6 3.3286 -4.7012 0.0010 9 1 2.4173 -5.2807 0.0000 10 6 4.5658 -5.3464 0.0029 11 7 5.6736 -4.6418 0.0036 12 14 4.6458 -7.2126 0.0030 13 1 3.2683 -7.7672 0.0015 14 1 5.3682 -7.6772 -1.2085 15 1 5.3646 -7.6772 1.2166 16 6 2.1394 -2.4939 -0.0065 17 7 0.8764 -3.0427 -0.0144 18 7 2.3168 -1.1342 0.0002 19 1 -0.3633 0.0001 1.0276 20 1 -0.3632 0.8900 -0.5139 21 1 -0.3634 -0.8899 -0.5138 22 1 1.9493 2.1194 -0.0004 23 1 4.5059 1.2922 0.0011 24 1 6.5336 -5.0904 0.0045 25 1 0.7663 -4.0064 -0.0148 26 1 0.0968 -2.4655 -0.0194 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261276935.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:50 Heat of formation + Delta-G solvation = 65.029561 kcal Electronic energy + Delta-G solvation = -12763.530861 eV Core-core repulsion = 10548.209849 eV Total energy + Delta-G solvation = -2215.321012 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.40970 -35.51524 -33.53966 -31.62992 -29.89288 -28.83887 -25.18527 -24.65277 -21.16635 -19.98354 -18.07086 -17.28542 -16.46495 -15.45817 -14.88119 -14.39110 -14.09275 -13.38375 -13.09488 -12.48200 -12.38624 -12.02842 -11.84366 -11.50995 -11.36188 -10.96074 -10.60565 -10.41610 -10.40487 -9.66131 -9.11964 -8.48107 -7.99883 -7.24404 -6.95427 -5.80550 -4.07880 2.52432 2.84410 2.97443 3.00209 3.02902 3.66899 3.75570 3.75863 3.86905 4.14138 4.96987 5.21469 5.69115 5.82964 6.01578 6.18053 6.28845 6.43200 6.81770 6.95527 7.10534 7.15333 7.79050 7.88813 7.97904 8.15159 8.30931 8.54190 8.90819 9.19031 10.01302 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.047301 B = 0.009783 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.817677 B = 2861.528996 C = 3438.193974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 C -0.175 4.175 4 C -0.206 4.206 5 C -0.059 4.059 6 S 0.118 5.882 7 C 0.002 3.998 8 C -0.391 4.391 9 H 0.092 0.908 10 C 0.057 3.943 11 N -0.807 5.807 12 Si 0.934 3.066 13 H -0.261 1.261 14 H -0.272 1.272 15 H -0.272 1.272 16 C 0.081 3.919 17 N -0.874 5.874 18 N -0.349 5.349 19 H 0.055 0.945 20 H 0.068 0.932 21 H 0.053 0.947 22 H 0.128 0.872 23 H 0.126 0.874 24 H 0.292 0.708 25 H 0.399 0.601 26 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 1.292 -0.039 4.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.158 4.158 3 C -0.201 4.201 4 C -0.239 4.239 5 C -0.284 4.284 6 S 0.371 5.629 7 C -0.122 4.122 8 C -0.427 4.427 9 H 0.110 0.890 10 C -0.160 4.160 11 N -0.436 5.436 12 Si 0.759 3.241 13 H -0.185 1.185 14 H -0.197 1.197 15 H -0.197 1.197 16 C -0.118 4.118 17 N -0.427 5.427 18 N -0.020 5.020 19 H 0.074 0.926 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.146 0.854 23 H 0.144 0.856 24 H 0.104 0.896 25 H 0.228 0.772 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.488 0.791 -0.035 2.611 hybrid contribution -1.734 -0.639 0.010 1.848 sum -4.222 0.151 -0.025 4.225 Atomic orbital electron populations 1.20123 0.89962 1.01547 1.01016 1.20191 0.92278 0.84292 1.19002 1.20132 0.92482 0.96105 1.11342 1.19518 0.96379 0.90168 1.17807 1.24818 0.87934 0.99847 1.15838 1.85326 1.06159 0.88055 1.83372 1.20619 0.88999 0.95167 1.07436 1.18284 0.93807 0.87982 1.42585 0.89024 1.25911 0.94703 1.02201 0.93146 1.68982 0.99167 1.37834 1.37583 0.85799 0.79505 0.80176 0.78669 1.18476 1.19707 1.19714 1.16383 0.87940 0.78592 1.28924 1.40762 1.02154 1.07929 1.91905 1.42040 1.06955 1.02814 1.50184 0.92587 0.91350 0.92820 0.85375 0.85573 0.89590 0.77196 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 9.78 36.01 0.35 -0.79 15 2 C -0.05 -0.98 7.11 -80.50 -0.57 -1.56 15 3 C -0.18 -3.62 10.72 -39.93 -0.43 -4.05 15 4 C -0.21 -4.63 10.89 -39.67 -0.43 -5.06 15 5 C -0.06 -1.47 7.97 -16.35 -0.13 -1.60 15 6 S 0.12 3.04 20.43 -107.50 -2.20 0.84 15 7 C 0.00 0.04 6.40 -38.68 -0.25 -0.20 15 8 C -0.39 -9.78 9.04 -38.43 -0.35 -10.13 15 9 H 0.09 2.12 6.92 -52.49 -0.36 1.76 15 10 C 0.06 1.35 5.49 -17.30 -0.10 1.25 15 11 N -0.81 -20.01 10.98 55.53 0.61 -19.40 15 12 Si 0.93 17.83 29.56 -169.99 -5.02 12.80 15 13 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 16 C 0.08 2.03 7.82 -152.16 -1.19 0.84 15 17 N -0.87 -18.28 9.01 31.68 0.29 -18.00 15 18 N -0.35 -8.61 3.13 -55.90 -0.18 -8.79 15 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.05 0.87 5.99 -51.93 -0.31 0.56 15 22 H 0.13 2.20 8.06 -52.49 -0.42 1.77 15 23 H 0.13 2.50 8.06 -52.49 -0.42 2.08 15 24 H 0.29 6.57 8.31 -40.82 -0.34 6.24 15 25 H 0.40 7.71 7.64 -40.82 -0.31 7.40 15 26 H 0.37 6.97 5.93 -40.82 -0.24 6.73 15 LS Contribution 236.83 15.07 3.57 3.57 Total: -1.00 -28.62 236.83 -8.08 -36.69 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -2.05 Total: 13.58 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -3.09 Total: -21.30 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.72 Total: -46.18 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.80 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.20 Total: 0.84 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.62 -8.08 -36.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276935.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.722 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds