Wall clock time and date at job start Mon Mar 30 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34438 * 125.53205 * 2 1 4 4 C 1.40863 * 107.66608 * 179.97438 * 3 2 1 5 5 C 1.35200 * 107.15080 * 0.02684 * 4 3 2 6 6 S 1.77213 * 144.62520 * 180.02562 * 5 4 3 7 7 C 1.77737 * 95.84656 * 179.97438 * 6 5 4 8 8 C 1.40035 * 128.04887 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99521 * 180.02562 * 8 7 6 10 10 C 1.39532 * 119.99866 * 0.02620 * 8 7 6 11 11 N 1.31283 * 120.00268 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99728 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47307 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47124 * 119.99654 * 12 10 8 15 15 H 1.48504 * 109.47207 * 239.99717 * 12 10 8 16 16 C 1.38860 * 103.90120 * 0.25768 * 7 6 5 17 17 N 1.37703 * 120.92368 * 179.73705 * 16 7 6 18 18 N 1.36934 * 109.64379 * 359.97214 * 5 4 3 19 19 H 1.08996 * 109.47241 * 270.00773 * 1 2 3 20 20 H 1.09002 * 109.46503 * 30.00567 * 1 2 3 21 21 H 1.08994 * 109.47350 * 149.99942 * 1 2 3 22 22 H 1.07993 * 126.17201 * 359.97438 * 3 2 1 23 23 H 1.07997 * 126.42515 * 180.02562 * 4 3 2 24 24 H 0.96998 * 120.00141 * 180.02562 * 11 10 8 25 25 H 0.97002 * 120.00137 * 0.03192 * 17 16 7 26 26 H 0.97008 * 120.00165 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2883 1.0940 0.0000 4 6 3.6290 0.6619 0.0006 5 6 3.6121 -0.6900 0.0003 6 16 4.6200 -2.1477 0.0010 7 6 3.2686 -3.3021 0.0003 8 6 3.3286 -4.7012 0.0010 9 1 2.4173 -5.2807 0.0000 10 6 4.5658 -5.3464 0.0029 11 7 5.6736 -4.6418 0.0036 12 14 4.6458 -7.2126 0.0030 13 1 3.2683 -7.7672 0.0015 14 1 5.3682 -7.6772 -1.2085 15 1 5.3646 -7.6772 1.2166 16 6 2.1394 -2.4939 -0.0065 17 7 0.8764 -3.0427 -0.0144 18 7 2.3168 -1.1342 0.0002 19 1 -0.3633 0.0001 1.0276 20 1 -0.3632 0.8900 -0.5139 21 1 -0.3634 -0.8899 -0.5138 22 1 1.9493 2.1194 -0.0004 23 1 4.5059 1.2922 0.0011 24 1 6.5336 -5.0904 0.0045 25 1 0.7663 -4.0064 -0.0148 26 1 0.0968 -2.4655 -0.0194 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261276935.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:50 Heat of formation + Delta-G solvation = 48.798296 kcal Electronic energy + Delta-G solvation = -12764.234702 eV Core-core repulsion = 10548.209849 eV Total energy + Delta-G solvation = -2216.024853 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.16267 -37.29107 -35.31701 -33.23528 -31.55160 -30.64007 -26.85132 -26.38961 -22.94980 -21.73460 -19.81073 -19.09057 -18.23260 -17.17077 -16.53244 -16.14298 -15.86845 -15.02406 -14.73886 -14.08289 -13.86502 -13.55970 -13.51086 -13.09068 -13.00015 -12.54652 -12.30525 -12.14962 -11.94087 -11.38678 -11.03101 -10.30236 -9.73472 -9.03046 -8.70790 -7.68832 -5.91938 0.76289 0.99420 1.41135 1.45763 1.57790 1.87474 1.96234 2.14173 2.18767 2.36137 3.13770 3.60749 4.14822 4.42341 4.60185 4.75549 4.85025 4.97314 5.09897 5.17134 5.37851 5.46469 5.98905 6.12868 6.24772 6.40618 6.60604 6.72957 7.14775 7.52639 8.28248 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.047301 B = 0.009783 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.817677 B = 2861.528996 C = 3438.193974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.051 4.051 3 C -0.175 4.175 4 C -0.206 4.206 5 C -0.095 4.095 6 S 0.075 5.925 7 C -0.036 4.036 8 C -0.419 4.419 9 H 0.103 0.897 10 C 0.014 3.986 11 N -0.840 5.840 12 Si 1.009 2.991 13 H -0.251 1.251 14 H -0.268 1.268 15 H -0.268 1.268 16 C 0.077 3.923 17 N -0.863 5.863 18 N -0.370 5.370 19 H 0.071 0.929 20 H 0.101 0.899 21 H 0.055 0.945 22 H 0.170 0.830 23 H 0.147 0.853 24 H 0.297 0.703 25 H 0.405 0.595 26 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 1.716 -0.050 5.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.162 4.162 3 C -0.200 4.200 4 C -0.239 4.239 5 C -0.319 4.319 6 S 0.327 5.673 7 C -0.159 4.159 8 C -0.454 4.454 9 H 0.120 0.880 10 C -0.198 4.198 11 N -0.470 5.470 12 Si 0.829 3.171 13 H -0.174 1.174 14 H -0.193 1.193 15 H -0.193 1.193 16 C -0.124 4.124 17 N -0.418 5.418 18 N -0.043 5.043 19 H 0.090 0.910 20 H 0.119 0.881 21 H 0.073 0.927 22 H 0.187 0.813 23 H 0.164 0.836 24 H 0.109 0.891 25 H 0.235 0.765 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.179 1.231 -0.046 4.357 hybrid contribution -1.299 -0.544 0.014 1.409 sum -5.479 0.687 -0.031 5.522 Atomic orbital electron populations 1.20287 0.86468 1.03266 1.02546 1.21229 0.94751 0.83568 1.16649 1.20681 0.91330 0.97912 1.10029 1.20052 0.98306 0.89474 1.16085 1.25077 0.88353 1.00435 1.18049 1.85180 1.07843 0.89636 1.84642 1.20979 0.89302 0.96025 1.09641 1.18633 0.94940 0.87962 1.43881 0.87956 1.26893 0.93874 1.06991 0.92064 1.69080 0.99850 1.39768 1.38280 0.84704 0.79832 0.73938 0.78606 1.17431 1.19329 1.19342 1.16641 0.88922 0.79099 1.27710 1.40693 1.01310 1.08509 1.91240 1.42316 1.07305 1.03200 1.51438 0.91021 0.88068 0.92666 0.81256 0.83567 0.89092 0.76467 0.78329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.01 9.78 71.24 0.70 -1.31 15 2 C -0.05 -2.06 7.11 40.49 0.29 -1.77 15 3 C -0.17 -6.68 10.72 22.04 0.24 -6.45 15 4 C -0.21 -8.96 10.89 22.21 0.24 -8.72 15 5 C -0.09 -4.77 7.97 83.20 0.66 -4.11 15 6 S 0.08 4.00 20.43 -56.49 -1.15 2.85 15 7 C -0.04 -1.92 6.40 22.85 0.15 -1.77 15 8 C -0.42 -21.36 9.04 23.02 0.21 -21.15 15 9 H 0.10 4.77 6.92 -2.91 -0.02 4.75 15 10 C 0.01 0.68 5.49 85.09 0.47 1.15 15 11 N -0.84 -42.89 10.98 21.78 0.24 -42.65 15 12 Si 1.01 36.46 29.56 68.60 2.03 38.49 15 13 H -0.25 -8.56 7.11 99.48 0.71 -7.85 15 14 H -0.27 -9.45 7.11 99.48 0.71 -8.75 15 15 H -0.27 -9.46 7.11 99.48 0.71 -8.75 15 16 C 0.08 3.85 7.82 131.96 1.03 4.88 15 17 N -0.86 -35.31 9.01 -53.70 -0.48 -35.79 15 18 N -0.37 -18.05 3.13 -330.77 -1.04 -19.09 15 19 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 20 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 21 H 0.05 1.61 5.99 -2.39 -0.01 1.60 15 22 H 0.17 4.97 8.06 -2.91 -0.02 4.94 15 23 H 0.15 5.57 8.06 -2.91 -0.02 5.54 15 24 H 0.30 13.75 8.31 -92.71 -0.77 12.98 15 25 H 0.40 15.38 7.64 -92.71 -0.71 14.67 15 26 H 0.39 13.69 5.93 -92.70 -0.55 13.14 15 Total: -1.00 -62.49 236.83 3.54 -58.94 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.03 Total: 36.50 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.98 Total: -39.25 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -1.28 Total: -97.53 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.15 Total: 2.85 kcal Total: -62.49 3.54 -58.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276935.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.743 kcal (2) G-P(sol) polarization free energy of solvation -62.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds