Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31038 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48502 * 109.47040 * 239.99777 * 3 2 1 5 5 H 1.48494 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46940 * 120.00166 * 3 2 1 7 7 C 1.39758 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.40923 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.38995 * 126.94559 * 359.97438 * 9 7 2 11 11 N 1.35580 * 109.33098 * 180.02562 * 10 9 7 12 12 H 0.96996 * 124.68164 * 179.97438 * 11 10 9 13 13 C 1.38016 * 110.63696 * 359.97438 * 11 10 9 14 14 C 1.38889 * 133.73332 * 180.02562 * 13 11 10 15 15 N 1.31772 * 120.50355 * 179.72340 * 14 13 11 16 16 C 1.32254 * 122.50442 * 0.56768 * 15 14 13 17 17 Cl 1.73599 * 119.50993 * 179.70610 * 16 15 14 18 18 C 1.38094 * 120.98157 * 359.42417 * 16 15 14 19 19 C 1.39311 * 118.62911 * 0.28161 * 18 16 15 20 20 H 0.97003 * 119.99937 * 359.97438 * 1 2 3 21 21 H 1.08004 * 125.33423 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.75003 * 359.97438 * 14 13 11 23 23 H 1.08001 * 120.68535 * 180.30006 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 3.0982 1.6963 -1.2125 5 1 1.2795 2.7464 -0.0006 6 1 3.0982 1.6963 1.2125 7 6 2.0091 -1.2104 0.0005 8 1 3.0892 -1.2104 0.0001 9 6 1.3044 -2.4307 0.0005 10 6 -0.0753 -2.5987 0.0005 11 7 -0.3662 -3.9230 0.0011 12 1 -1.2637 -4.2909 0.0016 13 6 0.7909 -4.6752 0.0009 14 6 1.0490 -6.0399 0.0009 15 7 2.2888 -6.4862 -0.0048 16 6 3.3353 -5.6775 0.0004 17 17 4.9357 -6.3500 0.0001 18 6 3.1738 -4.3060 0.0004 19 6 1.8813 -3.7861 0.0007 20 1 -0.4850 0.8401 0.0004 21 1 -0.8019 -1.7996 0.0009 22 1 0.2272 -6.7407 0.0014 23 1 4.0318 -3.6500 -0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279930.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = 28.480474 kcal Electronic energy + Delta-G solvation = -12243.218723 eV Core-core repulsion = 9888.436022 eV Total energy + Delta-G solvation = -2354.782700 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.87871 -38.77351 -37.18996 -35.52447 -33.12513 -30.47228 -30.36416 -27.02353 -24.34754 -23.02733 -21.59905 -19.35836 -18.00774 -17.72210 -16.73599 -16.36855 -15.61154 -15.52056 -14.92802 -14.45364 -13.99049 -13.35916 -13.10391 -12.93621 -12.63881 -12.19972 -12.16873 -11.94423 -11.78683 -11.35233 -10.64501 -10.52832 -9.12196 -8.77442 -8.48587 -6.07476 0.15883 0.57536 1.07496 1.41201 1.44296 1.54180 2.21096 2.28014 2.68819 2.91474 3.49358 3.71436 4.17162 4.26215 4.30246 4.73252 4.94365 5.10666 5.28164 5.52335 5.74206 5.89556 6.20734 6.59049 6.98244 7.01033 7.06889 7.22192 8.50169 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.035183 B = 0.008660 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.656699 B = 3232.519326 C = 4018.333106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.018 3.982 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.454 4.454 8 H 0.067 0.933 9 C -0.018 4.018 10 C -0.079 4.079 11 N -0.554 5.554 12 H 0.422 0.578 13 C 0.025 3.975 14 C 0.115 3.885 15 N -0.484 5.484 16 C 0.083 3.917 17 Cl -0.047 7.047 18 C -0.092 4.092 19 C -0.134 4.134 20 H 0.284 0.716 21 H 0.192 0.808 22 H 0.191 0.809 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -4.529 0.015 4.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.190 4.190 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.486 4.486 8 H 0.086 0.914 9 C -0.023 4.023 10 C -0.207 4.207 11 N -0.156 5.156 12 H 0.260 0.740 13 C -0.091 4.091 14 C -0.054 4.054 15 N -0.195 5.195 16 C -0.074 4.074 17 Cl -0.019 7.019 18 C -0.114 4.114 19 C -0.147 4.147 20 H 0.095 0.905 21 H 0.209 0.791 22 H 0.207 0.793 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.243 -5.243 0.006 5.248 hybrid contribution 0.028 1.472 0.000 1.472 sum 0.271 -3.771 0.007 3.780 Atomic orbital electron populations 1.69415 1.08153 1.29550 1.40940 1.26444 0.95785 1.03631 0.93183 0.85155 0.78417 0.76150 0.79421 1.19160 1.19337 1.19144 1.18977 0.94168 0.90267 1.45187 0.91423 1.18415 0.91832 0.89827 1.02229 1.23426 0.97506 0.83316 1.16486 1.41339 1.06285 1.05342 1.62683 0.74000 1.19490 0.87889 0.94168 1.07503 1.21858 0.93237 0.89849 1.00458 1.66715 0.98414 1.39311 1.15099 1.20836 0.87405 0.88502 1.10681 1.98302 1.19497 1.86721 1.97341 1.20994 0.96848 0.93325 1.00203 1.19777 0.92534 0.95392 1.06982 0.90525 0.79149 0.79253 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.97 10.33 21.80 0.23 -41.75 14 2 C 0.02 0.90 5.49 85.18 0.47 1.37 14 3 Si 0.99 38.32 29.56 68.60 2.03 40.35 14 4 H -0.27 -10.23 7.11 99.48 0.71 -9.53 14 5 H -0.27 -9.85 7.11 99.48 0.71 -9.15 14 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 14 7 C -0.45 -24.08 9.42 23.30 0.22 -23.86 14 8 H 0.07 3.51 7.84 -2.91 -0.02 3.49 14 9 C -0.02 -0.93 6.10 -20.05 -0.12 -1.05 14 10 C -0.08 -3.73 10.88 84.30 0.92 -2.82 14 11 N -0.55 -21.30 5.98 -184.91 -1.11 -22.41 14 12 H 0.42 12.17 8.96 -92.71 -0.83 11.34 14 13 C 0.03 1.02 7.29 38.93 0.28 1.31 14 14 C 0.12 4.06 11.23 84.86 0.95 5.01 14 15 N -0.48 -18.73 10.29 -186.23 -1.92 -20.65 14 16 C 0.08 3.31 7.27 84.60 0.62 3.93 14 17 Cl -0.05 -1.58 29.10 -2.72 -0.08 -1.66 14 18 C -0.09 -4.01 9.92 22.49 0.22 -3.78 14 19 C -0.13 -6.35 6.40 -20.04 -0.13 -6.48 14 20 H 0.28 12.81 8.30 -92.71 -0.77 12.04 14 21 H 0.19 9.28 5.68 -2.91 -0.02 9.26 14 22 H 0.19 4.86 8.06 -2.91 -0.02 4.84 14 23 H 0.13 5.41 8.06 -2.91 -0.02 5.39 14 Total: -1.00 -57.33 227.50 3.02 -54.32 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.43 Total: 18.17 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.43 Total: -26.37 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.80 Total: -84.80 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -57.33 3.02 -54.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279930.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.799 kcal (2) G-P(sol) polarization free energy of solvation -57.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds