Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48494 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47038 * 300.00457 * 3 2 1 6 6 H 1.48504 * 109.46632 * 60.00008 * 3 2 1 7 7 C 1.38988 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 N 1.36561 * 119.99785 * 359.97438 * 7 2 1 10 10 S 1.69262 * 125.65733 * 0.02971 * 9 7 2 11 11 C 1.76627 * 96.61499 * 179.97438 * 10 9 7 12 12 N 1.32334 * 132.62795 * 180.02562 * 11 10 9 13 13 C 1.31751 * 121.63871 * 179.97438 * 12 11 10 14 14 C 1.38608 * 120.87182 * 0.04592 * 13 12 11 15 15 C 1.37850 * 119.91954 * 359.97162 * 14 13 12 16 16 C 1.40715 * 106.06354 * 359.97438 * 11 10 9 17 17 C 1.33304 * 125.65212 * 180.02562 * 9 7 2 18 18 O 1.21834 * 121.71470 * 359.75662 * 17 9 7 19 19 H 0.96993 * 120.00468 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.56346 * 180.02562 * 13 12 11 21 21 H 1.08001 * 120.03613 * 179.97438 * 14 13 12 22 22 H 1.08003 * 120.66083 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7078 1.3464 0.0006 5 1 1.8890 2.3965 -1.2125 6 1 1.8890 2.3964 1.2126 7 6 2.0088 -1.2036 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3260 -2.3863 -0.0005 10 16 -0.3583 -2.5532 -0.0006 11 6 -0.3879 -4.3192 -0.0014 12 7 -1.3764 -5.1990 -0.0022 13 6 -1.1469 -6.4964 -0.0031 14 6 0.1485 -6.9895 -0.0023 15 6 1.2162 -6.1175 -0.0011 16 6 0.9576 -4.7311 -0.0021 17 6 1.8756 -3.6008 -0.0005 18 8 3.0839 -3.7570 -0.0049 19 1 -0.4850 0.8399 0.0004 20 1 -1.9791 -7.1847 -0.0042 21 1 0.3211 -8.0556 -0.0026 22 1 2.2304 -6.4886 -0.0009 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281964.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = 13.405453 kcal Electronic energy + Delta-G solvation = -12439.633952 eV Core-core repulsion = 10086.241256 eV Total energy + Delta-G solvation = -2353.392696 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73706 -38.00707 -34.58104 -32.65988 -31.74873 -30.55719 -26.16580 -23.42566 -22.99815 -20.14405 -19.02139 -17.02446 -16.84708 -15.69537 -14.95125 -14.72546 -14.62787 -14.17593 -13.00410 -12.92257 -12.68170 -12.24658 -12.16293 -11.51454 -10.89940 -10.63752 -10.60336 -9.94877 -9.50939 -9.28889 -9.15584 -8.68659 -8.47836 -6.90363 -6.58406 -4.39853 1.21603 1.73558 1.95603 2.87001 2.90895 2.99359 3.09602 3.62229 3.78287 4.32531 4.73355 4.77569 5.14853 5.32468 5.53223 5.71435 6.02585 6.37340 6.51644 6.95320 7.00499 7.21812 7.68961 8.36628 8.44237 8.57209 9.28633 10.08278 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.056213 B = 0.009813 C = 0.008379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.983524 B = 2852.661851 C = 3340.802978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.021 3.979 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.279 4.279 8 H 0.131 0.869 9 N -0.436 5.436 10 S 0.436 5.564 11 C 0.009 3.991 12 N -0.461 5.461 13 C 0.125 3.875 14 C -0.214 4.214 15 C 0.006 3.994 16 C -0.217 4.217 17 C 0.457 3.543 18 O -0.581 6.581 19 H 0.297 0.703 20 H 0.155 0.845 21 H 0.131 0.869 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 -4.753 0.008 5.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.183 4.183 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.408 4.408 8 H 0.148 0.852 9 N -0.241 5.241 10 S 0.578 5.422 11 C -0.241 4.241 12 N -0.173 5.173 13 C -0.043 4.043 14 C -0.239 4.239 15 C -0.022 4.022 16 C -0.233 4.233 17 C 0.246 3.754 18 O -0.468 6.468 19 H 0.111 0.889 20 H 0.173 0.827 21 H 0.149 0.851 22 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.203 -2.949 0.006 5.134 hybrid contribution 2.062 -0.784 0.004 2.206 sum -2.140 -3.733 0.011 4.303 Atomic orbital electron populations 1.67950 1.05944 1.29363 1.47575 1.25652 0.95869 1.01088 0.95649 0.85253 0.79415 0.78223 0.78520 1.18565 1.19717 1.19727 1.19995 0.93366 0.79322 1.48146 0.85164 1.45492 1.08125 1.08304 1.62202 1.86261 0.89913 0.84563 1.81460 1.26385 0.91354 1.07319 0.99062 1.67173 1.33948 1.01906 1.14291 1.22826 0.95885 0.91518 0.94055 1.21659 0.93690 1.00192 1.08396 1.21141 0.99514 0.90430 0.91090 1.20890 0.94992 0.95421 1.12014 1.17257 0.89051 0.82069 0.87005 1.90672 1.13762 1.84554 1.57828 0.88858 0.82742 0.85120 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.30 10.56 55.50 0.59 -20.72 14 2 C 0.02 0.51 5.49 -17.46 -0.10 0.41 14 3 Si 0.96 18.92 29.55 -169.99 -5.02 13.90 14 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 6 H -0.27 -5.23 7.11 56.52 0.40 -4.82 14 7 C -0.28 -7.49 9.91 -15.17 -0.15 -7.64 14 8 H 0.13 3.53 7.60 -52.49 -0.40 3.13 14 9 N -0.44 -11.74 3.16 -12.89 -0.04 -11.78 14 10 S 0.44 10.40 20.26 -107.50 -2.18 8.22 14 11 C 0.01 0.19 7.82 -16.40 -0.13 0.06 14 12 N -0.46 -9.22 10.38 -11.54 -0.12 -9.34 14 13 C 0.13 2.00 11.19 -17.45 -0.20 1.81 14 14 C -0.21 -3.32 10.05 -39.59 -0.40 -3.71 14 15 C 0.01 0.12 10.18 -38.67 -0.39 -0.27 14 16 C -0.22 -5.07 6.10 -104.96 -0.64 -5.71 14 17 C 0.46 12.35 7.58 -13.97 -0.11 12.24 14 18 O -0.58 -17.04 17.34 5.07 0.09 -16.95 14 19 H 0.30 6.66 8.31 -40.82 -0.34 6.32 14 20 H 0.16 1.78 8.06 -52.49 -0.42 1.36 14 21 H 0.13 1.49 8.06 -52.49 -0.42 1.06 14 22 H 0.13 2.30 8.06 -52.48 -0.42 1.88 14 LS Contribution 220.98 15.07 3.33 3.33 Total: -1.00 -30.52 220.98 -6.27 -36.79 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -0.80 Total: -0.64 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.11 Total: -2.81 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.43 Total: -41.84 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.09 Total: -16.95 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 16 Polarization: 10.40 SS G_CDS: -2.18 Total: 8.22 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -30.52 -6.27 -36.79 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281964.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.191 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds