Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50700 * 109.47022 * 119.99677 * 2 1 3 5 5 H 1.07998 * 120.00346 * 120.00075 * 4 2 1 6 6 C 1.37882 * 119.99816 * 300.00572 * 4 2 1 7 7 N 1.31517 * 119.99727 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00136 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46969 * 90.00442 * 8 6 4 10 10 H 1.48502 * 109.47127 * 210.00216 * 8 6 4 11 11 H 1.48501 * 109.47156 * 330.00215 * 8 6 4 12 12 C 1.50698 * 109.47299 * 239.99700 * 2 1 3 13 13 C 1.30910 * 125.08835 * 120.02579 * 12 2 1 14 14 N 1.37484 * 116.32010 * 179.97438 * 13 12 2 15 15 C 1.38924 * 139.53335 * 180.37117 * 14 13 12 16 16 C 1.34338 * 107.12287 * 180.02562 * 15 14 13 17 17 N 1.33877 * 108.38670 * 359.58296 * 16 15 14 18 18 C 1.32362 * 109.13581 * 0.26912 * 17 16 15 19 19 S 1.75778 * 125.09303 * 300.02370 * 12 2 1 20 20 H 1.09007 * 109.47140 * 60.00609 * 1 2 3 21 21 H 1.09001 * 109.46796 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47674 * 299.99924 * 1 2 3 23 23 H 0.97001 * 119.99894 * 179.97438 * 7 6 4 24 24 H 1.07999 * 121.84130 * 359.97438 * 13 12 2 25 25 H 1.08002 * 126.44153 * 359.93753 * 15 14 13 26 26 H 1.08002 * 125.81138 * 179.85501 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1370 -0.8595 3.5566 8 14 0.6256 1.2799 2.6540 9 1 -0.8023 0.8744 2.6992 10 1 0.9768 1.9955 3.9070 11 1 0.8489 2.1773 1.4922 12 6 2.0324 -0.7105 -1.2304 13 6 2.7886 -0.1727 -2.1538 14 7 3.1431 -0.9881 -3.2025 15 6 3.8865 -0.9389 -4.3751 16 6 3.8025 -2.1512 -4.9478 17 7 3.0479 -2.9352 -4.1680 18 6 2.6466 -2.2419 -3.1143 19 16 1.6908 -2.3852 -1.6405 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.9029 -0.5278 4.4376 24 1 3.1159 0.8548 -2.0951 25 1 4.4288 -0.0859 -4.7556 26 1 4.2685 -2.4448 -5.8768 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289843.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = 78.260455 kcal Electronic energy + Delta-G solvation = -12577.468274 eV Core-core repulsion = 10362.720996 eV Total energy + Delta-G solvation = -2214.747278 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.47328 -38.25701 -35.91142 -33.63461 -31.19293 -29.63019 -27.13778 -25.05191 -23.69351 -22.05891 -20.69387 -19.53877 -18.48255 -17.05084 -16.76961 -16.66147 -15.77432 -15.24954 -14.79856 -14.75602 -14.12783 -13.81930 -13.55460 -13.04314 -12.61157 -12.39921 -12.30945 -11.83118 -11.39937 -11.34488 -11.21774 -11.12947 -10.74983 -9.67540 -8.62871 -8.29400 -6.37467 -0.00346 0.11349 0.86038 1.31797 1.36831 1.40704 1.51290 1.71012 1.95632 2.33286 3.06003 3.51104 3.87096 4.12521 4.31731 4.45892 4.55643 4.61396 4.77575 4.87545 5.06347 5.21091 5.47448 5.54726 5.60648 5.92764 6.23657 6.69148 6.76919 7.27739 8.86662 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.056601 B = 0.008075 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.575478 B = 3466.453842 C = 3571.518720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 H 0.068 0.932 4 C -0.522 4.522 5 H 0.036 0.964 6 C 0.019 3.981 7 N -0.945 5.945 8 Si 0.948 3.052 9 H -0.266 1.266 10 H -0.302 1.302 11 H -0.233 1.233 12 C -0.129 4.129 13 C 0.010 3.990 14 N -0.402 5.402 15 C -0.054 4.054 16 C -0.003 4.003 17 N -0.501 5.501 18 C 0.096 3.904 19 S 0.167 5.833 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.267 0.733 24 H 0.210 0.790 25 H 0.222 0.778 26 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 5.254 -13.760 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.058 3.942 3 H 0.086 0.914 4 C -0.560 4.560 5 H 0.055 0.945 6 C -0.180 4.180 7 N -0.584 5.584 8 Si 0.774 3.226 9 H -0.193 1.193 10 H -0.230 1.230 11 H -0.156 1.156 12 C -0.248 4.248 13 C -0.116 4.116 14 N -0.081 5.081 15 C -0.186 4.186 16 C -0.153 4.153 17 N -0.226 5.226 18 C -0.269 4.269 19 S 0.418 5.582 20 H 0.090 0.910 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.226 0.774 25 H 0.239 0.761 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.124 3.475 -13.128 13.627 hybrid contribution 0.734 1.950 0.295 2.105 sum -0.389 5.425 -12.833 13.938 Atomic orbital electron populations 1.22172 0.95973 1.01640 1.00786 1.17842 0.93519 0.95920 0.86938 0.91416 1.21109 1.31988 1.12922 0.90002 0.94529 1.25841 0.96989 1.00030 0.95095 1.70039 1.47161 1.42437 0.98781 0.85868 0.78978 0.79838 0.77910 1.19254 1.23031 1.15582 1.24110 1.03339 0.96649 1.00689 1.20573 1.03596 0.99525 0.87914 1.44105 1.35953 1.10144 1.17866 1.23535 1.04488 1.03652 0.86959 1.23059 1.00658 0.89872 1.01683 1.70513 1.17060 1.32250 1.02791 1.26624 1.08793 0.86987 1.04473 1.84972 1.52455 1.11225 1.09592 0.91021 0.93122 0.93741 0.92349 0.77381 0.76149 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 8.59 71.98 0.62 -4.88 15 2 C 0.08 3.23 2.26 -12.29 -0.03 3.20 15 3 H 0.07 2.59 7.13 -2.39 -0.02 2.57 15 4 C -0.52 -27.51 9.04 25.60 0.23 -27.28 15 5 H 0.04 2.20 7.98 -2.91 -0.02 2.18 15 6 C 0.02 1.01 5.45 84.66 0.46 1.47 15 7 N -0.94 -56.61 13.96 21.45 0.30 -56.31 15 8 Si 0.95 40.78 24.37 68.60 1.67 42.45 15 9 H -0.27 -11.00 6.87 99.48 0.68 -10.31 15 10 H -0.30 -13.30 7.11 99.48 0.71 -12.59 15 11 H -0.23 -8.71 6.53 99.48 0.65 -8.06 15 12 C -0.13 -4.85 4.95 25.74 0.13 -4.72 15 13 C 0.01 0.34 11.07 83.86 0.93 1.26 15 14 N -0.40 -13.10 3.19 -355.68 -1.13 -14.24 15 15 C -0.05 -1.34 12.04 82.68 1.00 -0.34 15 16 C 0.00 -0.08 11.82 83.49 0.99 0.91 15 17 N -0.50 -18.23 11.33 -196.80 -2.23 -20.46 15 18 C 0.10 3.63 8.92 179.68 1.60 5.23 15 19 S 0.17 6.48 23.02 -56.49 -1.30 5.18 15 20 H 0.07 2.16 8.14 -2.38 -0.02 2.14 15 21 H 0.05 1.92 7.99 -2.39 -0.02 1.90 15 22 H 0.04 1.69 3.27 -2.39 -0.01 1.68 15 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 24 H 0.21 5.09 8.06 -2.91 -0.02 5.07 15 25 H 0.22 3.28 8.06 -2.91 -0.02 3.26 15 26 H 0.22 3.79 8.06 -2.91 -0.02 3.76 15 Total: -1.00 -67.03 237.52 4.35 -62.69 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.11 Total: 5.85 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 5.93 Total: -25.16 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.06 Total: -91.00 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.67 Total: 42.45 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.30 Total: 5.18 kcal Total: -67.03 4.35 -62.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289843.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.948 kcal (2) G-P(sol) polarization free energy of solvation -67.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds