Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36904 * 123.12915 * 2 1 4 4 C 1.40061 * 125.10144 * 0.02562 * 3 2 1 5 5 H 1.08005 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.40067 * 120.00467 * 179.97438 * 4 3 2 7 7 N 1.30858 * 119.99608 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00113 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47185 * 90.00261 * 8 6 4 10 10 H 1.48508 * 109.46846 * 210.00247 * 8 6 4 11 11 H 1.48499 * 109.47325 * 330.00084 * 8 6 4 12 12 S 1.75326 * 109.80165 * 180.02562 * 3 2 1 13 13 C 1.71400 * 92.17198 * 359.97438 * 12 3 2 14 14 C 1.37493 * 111.14306 * 0.02562 * 13 12 3 15 15 C 1.48059 * 110.62462 * 180.02562 * 14 13 12 16 16 O 1.21324 * 125.90371 * 180.26141 * 15 14 13 17 17 C 1.50636 * 108.19166 * 359.97438 * 15 14 13 18 18 C 1.51980 * 138.96960 * 180.02562 * 13 12 3 19 19 H 1.09003 * 109.47568 * 89.97105 * 1 2 3 20 20 H 1.08997 * 109.47189 * 209.97701 * 1 2 3 21 21 H 1.09009 * 109.46949 * 329.97346 * 1 2 3 22 22 H 0.96999 * 119.99665 * 179.97438 * 7 6 4 23 23 H 1.09000 * 110.29497 * 118.93164 * 17 15 14 24 24 H 1.09002 * 110.29615 * 241.06952 * 17 15 14 25 25 H 1.09000 * 110.12388 * 60.81979 * 18 13 12 26 26 H 1.09000 * 110.18411 * 299.16790 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2551 1.1465 0.0000 4 6 1.7357 2.4472 0.0005 5 1 0.6668 2.6018 0.0005 6 6 2.6024 3.5476 0.0010 7 7 3.8975 3.3602 0.0005 8 14 1.9095 5.2822 0.0024 9 1 1.7264 5.7410 1.4028 10 1 2.8517 6.1921 -0.6974 11 1 0.5997 5.2927 -0.6972 12 16 3.9612 0.7423 -0.0007 13 6 3.6296 -0.9393 -0.0003 14 6 2.2755 -1.1777 -0.0001 15 6 2.0022 -2.6329 0.0009 16 8 0.9050 -3.1507 -0.0033 17 6 3.3219 -3.3592 0.0008 18 6 4.3866 -2.2571 0.0001 19 1 -0.3634 0.0005 -1.0277 20 1 -0.3633 -0.8902 0.5135 21 1 -0.3633 0.8898 0.5143 22 1 4.4977 4.1222 0.0004 23 1 3.4150 -3.9743 0.8959 24 1 3.4143 -3.9754 -0.8936 25 1 5.0061 -2.3335 0.8936 26 1 5.0063 -2.3351 -0.8933 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291203.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = -54.496494 kcal Electronic energy + Delta-G solvation = -12639.089617 eV Core-core repulsion = 10386.292815 eV Total energy + Delta-G solvation = -2252.796802 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.66085 -37.95216 -36.38990 -34.68443 -30.12572 -29.55375 -26.98601 -25.85037 -21.84909 -21.58237 -19.24090 -18.79023 -17.34124 -16.65736 -16.55793 -15.53605 -15.21928 -14.79969 -14.35207 -14.25789 -13.89152 -13.57376 -13.17044 -12.97069 -12.81410 -12.64301 -12.22373 -12.09127 -11.90252 -11.76126 -11.13576 -11.04637 -10.35766 -9.30011 -8.81265 -8.67556 -6.39555 0.26394 1.01405 1.38898 1.44400 1.53709 1.60651 2.02869 2.21596 2.37491 3.09166 3.43659 3.92946 4.29466 4.32493 4.66897 4.77278 4.89742 4.92267 4.95057 5.05594 5.11323 5.15666 5.30413 5.48844 5.81058 5.97244 6.22221 6.50448 6.70273 6.78215 8.10605 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.045803 B = 0.009641 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.161673 B = 2903.710746 C = 3489.025352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.300 4.300 3 C -0.022 4.022 4 C -0.423 4.423 5 H 0.093 0.907 6 C 0.018 3.982 7 N -0.819 5.819 8 Si 1.004 2.996 9 H -0.260 1.260 10 H -0.260 1.260 11 H -0.260 1.260 12 S 0.244 5.756 13 C -0.357 4.357 14 C -0.196 4.196 15 C 0.408 3.592 16 O -0.511 6.511 17 C -0.151 4.151 18 C -0.021 4.021 19 H 0.034 0.966 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.308 0.692 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.089 0.911 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -1.643 0.054 4.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.306 4.306 3 C -0.141 4.141 4 C -0.459 4.459 5 H 0.110 0.890 6 C -0.198 4.198 7 N -0.448 5.448 8 Si 0.824 3.176 9 H -0.185 1.185 10 H -0.184 1.184 11 H -0.184 1.184 12 S 0.510 5.490 13 C -0.476 4.476 14 C -0.210 4.210 15 C 0.290 3.710 16 O -0.393 6.393 17 C -0.189 4.189 18 C -0.060 4.060 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.121 0.879 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.108 0.892 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.129 -0.972 0.048 5.221 hybrid contribution -1.787 -0.074 -0.005 1.788 sum 3.342 -1.045 0.042 3.502 Atomic orbital electron populations 1.19788 0.91791 0.99502 0.99033 1.18867 0.95786 0.90636 1.25328 1.21754 0.95868 0.96534 0.99979 1.19372 0.95827 0.89151 1.41528 0.88952 1.26990 0.94555 1.06505 0.91709 1.68637 1.04371 1.36308 1.35455 0.84805 0.79153 0.73940 0.79704 1.18481 1.18427 1.18393 1.83344 1.05312 0.89028 1.71283 1.26973 0.99061 1.04490 1.17056 1.20910 0.94623 0.95068 1.10355 1.23231 0.90575 0.88810 0.68431 1.90403 1.30716 1.76187 1.41966 1.22193 0.91404 0.98918 1.06428 1.20295 0.95951 0.86265 1.03442 0.94736 0.94487 0.93219 0.87877 0.85690 0.85704 0.89218 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -2.05 9.85 71.23 0.70 -1.34 15 2 C -0.30 -15.88 6.00 -19.59 -0.12 -16.00 15 3 C -0.02 -1.17 6.12 22.40 0.14 -1.04 15 4 C -0.42 -21.73 8.86 23.16 0.21 -21.52 15 5 H 0.09 4.62 6.76 -2.91 -0.02 4.60 15 6 C 0.02 0.84 5.50 85.28 0.47 1.31 15 7 N -0.82 -38.13 10.62 21.86 0.23 -37.89 15 8 Si 1.00 35.15 29.56 68.60 2.03 37.17 15 9 H -0.26 -8.83 7.11 99.48 0.71 -8.13 15 10 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 11 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 12 S 0.24 11.59 19.97 -56.49 -1.13 10.46 15 13 C -0.36 -15.67 7.24 25.92 0.19 -15.48 15 14 C -0.20 -9.53 6.34 -20.26 -0.13 -9.66 15 15 C 0.41 17.52 7.78 28.27 0.22 17.74 15 16 O -0.51 -24.42 17.71 -3.16 -0.06 -24.47 15 17 C -0.15 -4.50 6.85 29.91 0.20 -4.30 15 18 C -0.02 -0.65 6.84 30.34 0.21 -0.44 15 19 H 0.03 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.04 1.76 7.82 -2.39 -0.02 1.74 15 21 H 0.05 2.28 6.99 -2.38 -0.02 2.27 15 22 H 0.31 12.71 8.30 -92.71 -0.77 11.94 15 23 H 0.13 3.03 8.14 -2.39 -0.02 3.01 15 24 H 0.13 3.03 8.14 -2.39 -0.02 3.01 15 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -61.13 241.13 4.36 -56.77 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.20 Total: 8.70 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 2.09 Total: -50.74 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.23 Total: -37.89 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.47 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.17 kcal Atomic # 16 Polarization: 11.59 SS G_CDS: -1.13 Total: 10.46 kcal Total: -61.13 4.36 -56.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291203.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.271 kcal (2) G-P(sol) polarization free energy of solvation -61.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds