Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48509 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47070 * 299.99986 * 3 2 1 6 6 H 1.48500 * 109.47076 * 60.00392 * 3 2 1 7 7 C 1.40285 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00044 * 179.97438 * 7 2 1 9 9 C 1.39966 * 119.99852 * 359.97438 * 7 2 1 10 10 C 1.39215 * 125.67946 * 180.02562 * 9 7 2 11 11 C 1.40603 * 107.45830 * 179.73529 * 10 9 7 12 12 C 1.40575 * 134.28277 * 179.97438 * 11 10 9 13 13 C 1.36673 * 118.72483 * 179.97438 * 12 11 10 14 14 Cl 1.73596 * 119.31884 * 179.97438 * 13 12 11 15 15 N 1.32353 * 121.36735 * 0.02562 * 13 12 11 16 16 C 1.31805 * 122.60163 * 359.97438 * 15 13 12 17 17 C 1.38823 * 120.39693 * 0.02562 * 16 15 13 18 18 N 1.37898 * 133.72350 * 180.02562 * 17 16 15 19 19 H 0.96997 * 125.59578 * 359.95990 * 18 17 16 20 20 H 0.96996 * 119.99813 * 359.97438 * 1 2 3 21 21 H 1.08003 * 126.26777 * 359.76753 * 10 9 7 22 22 H 1.08003 * 120.63498 * 359.97417 * 12 11 10 23 23 H 1.07995 * 119.79986 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3462 -0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8822 2.3963 1.2126 7 6 2.0083 -1.2149 -0.0005 8 1 3.0882 -1.2150 -0.0010 9 6 1.3084 -2.4270 -0.0005 10 6 1.8816 -3.6957 -0.0005 11 6 0.8331 -4.6324 0.0057 12 6 0.7716 -6.0368 0.0081 13 6 -0.4545 -6.6406 0.0151 14 17 -0.5484 -8.3740 0.0176 15 7 -1.5718 -5.9311 0.0191 16 6 -1.5761 -4.6130 0.0170 17 6 -0.3810 -3.9067 0.0100 18 7 -0.0675 -2.5639 0.0068 19 1 -0.7072 -1.8347 0.0087 20 1 -0.4850 0.8400 0.0004 21 1 2.9383 -3.9193 -0.0041 22 1 1.6759 -6.6273 0.0046 23 1 -2.5150 -4.0794 0.0200 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297515.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = 16.449610 kcal Electronic energy + Delta-G solvation = -12189.953896 eV Core-core repulsion = 9834.649498 eV Total energy + Delta-G solvation = -2355.304398 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.92267 -38.88446 -37.22956 -35.53062 -33.06903 -31.23332 -29.93478 -27.80243 -23.91659 -23.03436 -21.35030 -19.94839 -18.33943 -17.46133 -16.75582 -16.51341 -15.58108 -15.32962 -14.92221 -14.14793 -14.06844 -13.76925 -13.02403 -12.99142 -12.87501 -12.46806 -12.20661 -12.12327 -11.87990 -11.34774 -10.82312 -10.44707 -9.39823 -9.05598 -8.63629 -6.63186 0.16662 0.72874 1.06568 1.32729 1.41160 1.58670 2.01584 2.12555 2.81983 3.04750 3.19767 3.74091 4.24382 4.36156 4.51920 4.80390 4.89574 5.04291 5.23884 5.42581 5.59630 5.80109 5.91080 6.42948 6.44584 6.76452 7.11611 7.37310 8.00957 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.087116 B = 0.006493 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.332011 B = 4310.991467 C = 4622.476285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.034 3.966 3 Si 1.013 2.987 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.111 0.889 9 C 0.276 3.724 10 C -0.395 4.395 11 C -0.030 4.030 12 C -0.175 4.175 13 C 0.135 3.865 14 Cl -0.049 7.049 15 N -0.529 5.529 16 C 0.120 3.880 17 C -0.030 4.030 18 N -0.581 5.581 19 H 0.427 0.573 20 H 0.308 0.692 21 H 0.128 0.872 22 H 0.140 0.860 23 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 0.060 0.012 0.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.833 3.167 4 H -0.175 1.175 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.129 0.871 9 C 0.163 3.837 10 C -0.418 4.418 11 C -0.040 4.040 12 C -0.198 4.198 13 C -0.023 4.023 14 Cl -0.020 7.020 15 N -0.243 5.243 16 C -0.043 4.043 17 C -0.139 4.139 18 N -0.198 5.198 19 H 0.276 0.724 20 H 0.120 0.880 21 H 0.146 0.854 22 H 0.157 0.843 23 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.538 -0.386 0.017 0.662 hybrid contribution 0.668 0.995 -0.007 1.198 sum 0.130 0.609 0.010 0.622 Atomic orbital electron populations 1.68681 1.09334 1.32685 1.35983 1.27161 0.95716 1.05742 0.89536 0.84635 0.79175 0.73850 0.79087 1.17536 1.18766 1.18758 1.19599 0.96382 0.88627 1.44376 0.87070 1.18619 0.81324 0.94581 0.89198 1.20641 0.97091 0.90201 1.33897 1.18425 0.93985 0.92651 0.98967 1.20767 0.97182 0.92629 1.09216 1.20663 0.90025 0.86206 1.05444 1.98300 1.98717 1.07867 1.97164 1.66758 1.30205 1.07054 1.20241 1.21569 0.95350 0.87818 0.99564 1.19792 0.96649 0.86366 1.11105 1.43040 1.07624 1.04575 1.64572 0.72403 0.87951 0.85358 0.84257 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -35.99 10.61 21.89 0.23 -35.76 14 2 C 0.03 1.44 5.50 85.36 0.47 1.91 14 3 Si 1.01 31.73 29.56 68.60 2.03 33.76 14 4 H -0.25 -7.73 7.11 99.48 0.71 -7.02 14 5 H -0.26 -7.97 7.11 99.48 0.71 -7.26 14 6 H -0.26 -7.96 7.11 99.48 0.71 -7.25 14 7 C -0.46 -21.38 9.32 23.19 0.22 -21.16 14 8 H 0.11 4.88 7.85 -2.91 -0.02 4.86 14 9 C 0.28 13.81 6.67 38.78 0.26 14.07 14 10 C -0.40 -19.41 10.87 23.08 0.25 -19.16 14 11 C -0.03 -1.43 6.21 -21.34 -0.13 -1.57 14 12 C -0.18 -7.52 9.89 22.47 0.22 -7.30 14 13 C 0.13 5.61 7.22 84.25 0.61 6.22 14 14 Cl -0.05 -1.67 29.08 -2.72 -0.08 -1.75 14 15 N -0.53 -22.76 10.29 -187.27 -1.93 -24.69 14 16 C 0.12 5.07 11.24 84.84 0.95 6.02 14 17 C -0.03 -1.41 7.29 39.12 0.29 -1.12 14 18 N -0.58 -28.01 5.83 -180.08 -1.05 -29.06 14 19 H 0.43 19.81 6.18 -92.71 -0.57 19.23 14 20 H 0.31 11.63 8.29 -92.71 -0.77 10.86 14 21 H 0.13 5.87 8.06 -2.91 -0.02 5.85 14 22 H 0.14 5.29 8.06 -2.91 -0.02 5.27 14 23 H 0.17 6.00 8.06 -2.91 -0.02 5.98 14 Total: -1.00 -52.09 227.40 3.02 -49.07 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.69 Total: 30.51 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.13 Total: -22.09 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.74 Total: -89.51 kcal Atomic # 14 Polarization: 31.73 SS G_CDS: 2.03 Total: 33.76 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -52.09 3.02 -49.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297515.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.520 kcal (2) G-P(sol) polarization free energy of solvation -52.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds