Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 N 1.33767 * 126.08298 * 60.02634 * 12 2 1 14 14 C 1.30385 * 109.48332 * 179.97438 * 13 12 2 15 15 N 1.37546 * 108.86742 * 0.02562 * 14 13 12 16 16 C 1.37648 * 140.04107 * 180.02562 * 15 14 13 17 17 C 1.30879 * 116.39031 * 179.26614 * 16 15 14 18 18 S 1.75787 * 109.97856 * 0.55518 * 17 16 15 19 19 C 1.36063 * 106.38733 * 359.75719 * 15 14 13 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 24 24 H 1.07997 * 125.56244 * 180.02562 * 14 13 12 25 25 H 1.07993 * 121.80430 * 359.97438 * 16 15 14 26 26 H 1.07999 * 125.00863 * 180.16554 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 7 1.7858 -1.9828 1.5614 14 6 2.3782 -2.2615 2.6889 15 7 3.0436 -1.1416 3.1305 16 6 3.8326 -0.7283 4.1800 17 6 4.2593 0.5081 4.1353 18 16 3.6521 1.3011 2.6887 19 6 2.8228 -0.1725 2.2013 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7095 1.1620 -3.4843 24 1 2.3509 -3.2159 3.1937 25 1 4.0951 -1.3920 4.9905 26 1 4.8863 0.9745 4.8808 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261301255.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = 91.797238 kcal Electronic energy + Delta-G solvation = -12686.973168 eV Core-core repulsion = 10472.812889 eV Total energy + Delta-G solvation = -2214.160279 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.03765 -36.38058 -33.93429 -30.91686 -29.73671 -27.93574 -25.00275 -23.27170 -22.06289 -20.31935 -19.77255 -17.42290 -16.09087 -15.33324 -15.19443 -14.52642 -14.44836 -13.94371 -12.93154 -12.73013 -12.31532 -11.74805 -11.27523 -10.84936 -10.80833 -10.69688 -10.38605 -10.04512 -9.87099 -9.47326 -9.34755 -8.89210 -8.78138 -8.27407 -6.72334 -5.89466 -3.94130 1.34207 1.67798 2.17911 2.66219 3.08379 3.39024 3.44371 3.48962 3.77129 4.54209 4.84116 5.00536 5.35050 5.38150 5.41818 5.84414 6.18695 6.41946 6.97169 7.05117 7.24896 7.38617 7.63676 7.77091 7.99263 8.20079 8.45855 8.66149 9.06569 9.68530 11.16355 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.039715 B = 0.008598 C = 0.008220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.854566 B = 3255.685739 C = 3405.675404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.114 3.886 3 H 0.037 0.963 4 C -0.493 4.493 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.114 3.886 13 N -0.437 5.437 14 C 0.172 3.828 15 N -0.422 5.422 16 C 0.050 3.950 17 C -0.230 4.230 18 S 0.122 5.878 19 C -0.117 4.117 20 H 0.035 0.965 21 H 0.004 0.996 22 H 0.086 0.914 23 H 0.260 0.740 24 H 0.207 0.793 25 H 0.172 0.828 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -0.980 13.399 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.094 3.906 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.024 4.024 13 N -0.152 5.152 14 C -0.109 4.109 15 N -0.104 5.104 16 C -0.080 4.080 17 C -0.369 4.369 18 S 0.378 5.622 19 C -0.337 4.337 20 H 0.054 0.946 21 H 0.023 0.977 22 H 0.104 0.896 23 H 0.070 0.930 24 H 0.223 0.777 25 H 0.190 0.810 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.161 -0.135 12.339 13.375 hybrid contribution 0.793 -1.440 0.410 1.694 sum 5.953 -1.574 12.749 14.158 Atomic orbital electron populations 1.21699 0.97184 0.99797 0.99859 1.17335 0.93040 0.93926 0.86283 0.94493 1.21006 1.30677 1.11974 0.89563 0.92511 1.24926 0.95250 0.95071 0.98830 1.69886 1.37136 1.23018 1.23292 0.86545 0.79241 0.79349 0.82581 1.20666 1.21312 1.20049 1.21336 0.96013 0.88946 0.96073 1.70126 1.20470 1.14817 1.09816 1.25366 0.98986 0.91379 0.95218 1.44201 1.37410 1.12094 1.16667 1.20284 0.97294 0.97085 0.93369 1.24999 1.09257 0.97620 1.05010 1.84511 1.52022 1.08470 1.17189 1.24188 1.14822 0.94715 0.99986 0.94630 0.97677 0.89556 0.93039 0.77695 0.81042 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.95 37.16 0.33 -2.99 15 2 C 0.11 3.07 2.71 -92.92 -0.25 2.81 15 3 H 0.04 1.05 8.11 -51.93 -0.42 0.63 15 4 C -0.49 -14.35 8.55 -34.44 -0.29 -14.65 15 5 H 0.06 1.69 7.74 -52.49 -0.41 1.29 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -26.12 11.32 55.43 0.63 -25.49 15 8 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 15 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 12 C 0.11 2.75 5.59 -82.46 -0.46 2.29 15 13 N -0.44 -9.91 11.22 -10.02 -0.11 -10.02 15 14 C 0.17 3.03 13.08 -88.14 -1.15 1.88 15 15 N -0.42 -7.31 3.19 -63.94 -0.20 -7.51 15 16 C 0.05 0.64 11.27 -16.62 -0.19 0.45 15 17 C -0.23 -2.81 11.10 29.05 0.32 -2.49 15 18 S 0.12 2.03 23.36 -107.50 -2.51 -0.48 15 19 C -0.12 -2.43 7.73 -16.39 -0.13 -2.56 15 20 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 15 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 15 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 24 H 0.21 2.52 8.06 -52.49 -0.42 2.10 15 25 H 0.17 1.42 8.06 -52.49 -0.42 0.99 15 26 H 0.18 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 244.90 15.07 3.69 3.69 Total: -1.00 -32.77 244.90 -7.83 -40.61 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: -2.39 Total: -4.30 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.91 Total: -13.63 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.31 Total: -43.02 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.51 Total: -0.48 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.77 -7.83 -40.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301255.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.403 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds